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BaseInfo

ncRNA ID novel_zma_miR5759
Species Zea mays
Class miRNA
Genome position Chr10:127569462-127569558 [+]
Reference genome RefGen_v4
Source SRR2647221
Length 24
Mature sequence(if miRNA) 1 - ACGAAUUUAUUAAGUCUAAUUAAU - 24
Stem-loop(if miRNA) --                      AU       -  -A  A   UCUCC
  ACGAAUUUAUUAAGUCUAAUUA  CUAUAAU CA  CA AUA     U
  ||||||||||||||||||||||  ||||||| ||  || |||     G
  UGCUUGGAUAAUUCGGAUUAAU  GGUAUUA GU  GU UAU     C
UU                      CU       A  AG  A   UACGA
Stem-loop sequence ACGAAUUUAUUAAGUCUAAUUAAUCUAUAAUCAACAAAUAUCUCCUGCAGCAUUAUAUGGAUGAAUUAUGGUCUAAUUAGGCUUAAUAGGUUCGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020537836.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  |||||||||==|||||||||||||
targets:447   AUUAAUUAGGUUUAAUAAAUUCGU   470

2.0 PREDICTED: Zea mays uncharacterized LOC103625804 (LOC103625804), mRNA NA coding protein psRNATarget
BT033512.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  *|||||||||=||||||||||=||
targets:2298   UUUAAUUAGAUUUAAUAAAUUUGU   2321

2.5 Zea mays full-length cDNA clone ZM_BFb0200O13 mRNA, complete cds NA coding protein psRNATarget
NM_001136859.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  *|||||||||=||||||||||=||
targets:2298   UUUAAUUAGAUUUAAUAAAUUUGU   2321

2.5 Zea mays Ubiquitin fusion degradation UFD1 family protein (AY110113), mRNA NA coding protein psRNATarget
EU943817.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  *|||||||||=||||*||||||||
targets:31   CUUAAUUAGAUUUAACAAAUUCGU   54

2.5 Zea mays clone 1688509 mRNA sequence NA coding protein psRNATarget
EZ068830.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  *||||||||*=|||||||||||||
targets:95   CUUAAUUAGUUUUAAUAAAUUCGU   118

2.0 TSA: Zea mays contig04465, mRNA sequence NA coding protein psRNATarget
BT088020.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  |*||||||||=||||||*||||||
targets:1811   ACUAAUUAGAUUUAAUAUAUUCGU   1834

2.5 Zea mays full-length cDNA clone ZM_BFb0358M05 mRNA, complete cds NA coding protein psRNATarget
XM_020553411.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  |*||||||||=||||||*||||||
targets:1196   ACUAAUUAGAUUUAAUAUAUUCGU   1219

2.5 PREDICTED: Zea mays nitrate-induced NOI protein (LOC100285658), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020553410.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  |*||||||||=||||||*||||||
targets:1194   ACUAAUUAGAUUUAAUAUAUUCGU   1217

2.5 PREDICTED: Zea mays nitrate-induced NOI protein (LOC100285658), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020553409.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  |*||||||||=||||||*||||||
targets:1276   ACUAAUUAGAUUUAAUAUAUUCGU   1299

2.5 PREDICTED: Zea mays nitrate-induced NOI protein (LOC100285658), transcript variant X1, mRNA NA coding protein psRNATarget
BT068585.1
ncRNA:24   UAAUUAAUCUGAAUUAUUUAAGCA   1
  |*||||||||=||||||*||||||
targets:871   ACUAAUUAGAUUUAAUAUAUUCGU   894

2.5 Zea mays full-length cDNA clone ZM_BFb0336C10 mRNA, complete cds NA coding protein psRNATarget