ncRNA ID | novel_zma_miR5755 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:20294275-20294408 [-] |
Reference genome | RefGen_v4 |
Source | SRR2647221;SRR2647389;SRR2647390;SRR2647467 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACCGUCCGCGUCUGUGCAGAGAGC - 24 |
Stem-loop(if miRNA) |
--CCC       C        C    --    UGUA   G     C     --   ---C  UA   -   A      CUGCGCA GCGCGGAC GUCC  GGCC    GGC CGGAC GUCCG  GCC    GU  GGC AGG A      ||||||| |||||||| ||||  ||||    ||| ||||| |||||  |||    ||  ||| |||      GACGUGU UGCGCCUG CAGG  CCGG    CCG GCCUG CAGGC  UGG    CA  CCG UCC A CGAGA       C        C    CG    -UCC   -     C     GC   ACCU  CC   A   C |
Stem-loop sequence | CCCCUGCGCACGCGCGGACCGUCCGGCCUGUAGGCGCGGACCGUCCGGCCCGUUAGGCAGGAAACCCUAGCCCCACUCCAGGUCGCGGACCGUCCGGCCCCUGGCCGCGGACCGUCCGCGUCUGUGCAGAGAGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EU968855.1 |
|
2.0 | Zea mays clone 324570 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EU957504.1 |
|
2.5 | Zea mays clone 1595644 transferase mRNA, complete cds | NA | coding protein | psRNATarget |