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BaseInfo

ncRNA ID novel_zma_miR5755
Species Zea mays
Class miRNA
Genome position Chr5:20294275-20294408 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647389;SRR2647390;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - ACCGUCCGCGUCUGUGCAGAGAGC - 24
Stem-loop(if miRNA) --CCC       C        C    --    UGUA   G     C     --   ---C  UA   -   A
     CUGCGCA GCGCGGAC GUCC  GGCC    GGC CGGAC GUCCG  GCC    GU  GGC AGG A
     ||||||| |||||||| ||||  ||||    ||| ||||| |||||  |||    ||  ||| |||
     GACGUGU UGCGCCUG CAGG  CCGG    CCG GCCUG CAGGC  UGG    CA  CCG UCC A
CGAGA       C        C    CG    -UCC   -     C     GC   ACCU  CC   A   C
Stem-loop sequence CCCCUGCGCACGCGCGGACCGUCCGGCCUGUAGGCGCGGACCGUCCGGCCCGUUAGGCAGGAAACCCUAGCCCCACUCCAGGUCGCGGACCGUCCGGCCCCUGGCCGCGGACCGUCCGCGUCUGUGCAGAGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU968855.1
ncRNA:24   CGAGAGACGUGUCUGCGCCUGCCA   1
  ||||||||**||||||||||||||
targets:686   GCUCUCUGGUCAGACGCGGACGGU   709

2.0 Zea mays clone 324570 mRNA sequence NA coding protein psRNATarget
EU957504.1
ncRNA:24   CGAGAGACGUGUCUGCGCCUGCCA   1
  ||||*|||||*||=||||||||||
targets:1855   GCUCGCUGCAGAGGCGCGGACGGU   1878

2.5 Zea mays clone 1595644 transferase mRNA, complete cds NA coding protein psRNATarget