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BaseInfo

ncRNA ID novel_zma_miR5750
Species Zea mays
Class miRNA
Genome position Chr5:118862650-118862737 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 21
Mature sequence(if miRNA) 68 - CGGCUCUGGGCCGAACGGUCC - 88
Stem-loop(if miRNA) --      U    -  A  G     C   CU    -   --    C G
  CGGCUC GGGC CG AC GUCCG GAC  GGCG GCA  GAAG G G
  |||||| |||| || || ||||| |||  |||| |||  |||| |
  GCCGGG CUCG GC UG CAGGC CUG  UCGU CGU  CUUC C U
AA      U    A  C  G     -   --    A   AC    - G
Stem-loop sequence CGGCUCUGGGCCGAACGGUCCGCGACCUGGCGGCAGAAGCGGGUGCCUUCCAUGCAUGCUGUCCGGACGGUCCGAGCUCUGGGCCGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948361.1
ncRNA:21   CCUGGCAAGCCGGGUCUCGGC   1
  |||=||||||||||||||||*
targets:502   GGAUCGUUCGGCCCAGAGCCA   522

2.0 Zea mays clone 373551 mRNA sequence NA coding protein psRNATarget
AY110286.1
ncRNA:21   CCUGGCAAGCCGGGUCUCGGC   1
  **|||||||||||||||*||*
targets:770   CCACCGUUCGGCCCAGAUCCC   790

2.5 Zea mays CL52289_1 mRNA sequence NA coding protein psRNATarget