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BaseInfo

ncRNA ID novel_zma_miR5744
Species Zea mays
Class miRNA
Genome position Chr5:217649838-217649916 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 23
Mature sequence(if miRNA) 57 - GGUCAAAUGAUGUUAGAAUUGUU - 79
Stem-loop(if miRNA) --      AU       G   UG U   U    U     U
  GGUCAA  GAUGUUA AAU  U UAA AUCU UAAUU A
  ||||||  ||||||| |||  | ||| |||| ||||| G
  UUAGUU  UUAUAAU UUA  G AUU UAGG AUUGA U
UU      --       G   GU U   U    U     A
Stem-loop sequence GGUCAAAUGAUGUUAGAAUUGUUUAAUAUCUUUAAUUUAGUAAGUUAUGGAUUUUAUGUGAUUGUAAUAUUUUGAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008683131.2
ncRNA:23   UUGUUAAGAUUGUAGUAAACUGG   1
  ||||||*||||||||||||*|||
targets:1069   AACAAUACUAACAUCAUUUAACC   1091

2.5 PREDICTED: Zea mays chaperone protein dnaJ (LOC100272398), transcript variant X1, mRNA NA coding protein psRNATarget