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BaseInfo

ncRNA ID	novel_zma_miR5739
Species	Zea mays
Class	miRNA
Genome position	Chr5:171267587-171267682 [+]
Reference genome	RefGen_v4
Source	SRR2647221
Length	24
Mature sequence(if miRNA)	1 - UUUAUUCUAUUUUAGUCACUAAAU - 24
Stem-loop(if miRNA)	--                C             A   GU         C   UUUAUUCUAUUUUAGU ACUAAAUUGCUAA UAU  AAACUAAAA U   |||||||||||||||| ||||||||||||| |||  ||||||||| C   AAAUAAGGUAAAAUCA UGAUUUAAUGGUU AUG  UUUGAUUUU U GU                A             -   GU         A
Stem-loop sequence	UUUAUUCUAUUUUAGUCACUAAAUUGCUAAAUAUGUAAACUAAAACUCUAUUUUAGUUUUGGUAUUGGUAAUUUAGUAACUAAAAUGGAAUAAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163455.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*||||||||||||||||| targets:111   AUUUAGGGACUAAAAUAGAAUAAA   134 Target Full Sequence	1.0	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*||||||||||||||||| targets:111   AUUUAGGGACUAAAAUAGAAUAAA   134 Target Full Sequence	1.0	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*||||||||||||||||| targets:111   AUUUAGGGACUAAAAUAGAAUAAA   134 Target Full Sequence	1.0	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:1208   AUUUAGGGACUAAAAUGGAAUAAA   1231 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:1208   AUUUAGGGACUAAAAUGGAAUAAA   1231 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
EZ103355.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:63   AUUUAGAGACUAAAAUGGAAUAAA   86 Target Full Sequence	2.5	TSA: Zea mays contig39012, mRNA sequence	NA	coding protein	psRNATarget
LQ235475.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1470 from Patent EP2985353	NA	coding protein	psRNATarget
JB163779.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1443 from Patent EP2559767	NA	coding protein	psRNATarget
JB163910.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
HI403268.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1393 from Patent EP2074227	NA	coding protein	psRNATarget
HI403449.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
JB163806.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1470 from Patent EP2559767	NA	coding protein	psRNATarget
JB163694.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1358 from Patent EP2559767	NA	coding protein	psRNATarget
JB163772.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1436 from Patent EP2559767	NA	coding protein	psRNATarget
HI403311.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1436 from Patent EP2074227	NA	coding protein	psRNATarget
JB163861.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1525 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235398.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1393 from Patent EP2985353	NA	coding protein	psRNATarget
JB163803.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1467 from Patent EP2559767	NA	coding protein	psRNATarget
HI403400.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1525 from Patent EP2074227	NA	coding protein	psRNATarget
JB163859.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
HI403398.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235448.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1443 from Patent EP2985353	NA	coding protein	psRNATarget
HI403345.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1470 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235441.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1436 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235363.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1358 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235530.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1525 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
JB163729.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1393 from Patent EP2559767	NA	coding protein	psRNATarget
HI403318.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1443 from Patent EP2074227	NA	coding protein	psRNATarget
HI403342.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1467 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235472.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1467 from Patent EP2985353	NA	coding protein	psRNATarget
HI403233.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:77   AUUUAGGGACUAAAAUGGAAUAAA   100 Target Full Sequence	2.5	Sequence 1358 from Patent EP2074227	NA	coding protein	psRNATarget
JB163700.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:61   AUUUAGGGACUAAAAUGGAAUAAA   84 Target Full Sequence	2.5	Sequence 1364 from Patent EP2559767	NA	coding protein	psRNATarget
HI403239.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:61   AUUUAGGGACUAAAAUGGAAUAAA   84 Target Full Sequence	2.5	Sequence 1364 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235369.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:61   AUUUAGGGACUAAAAUGGAAUAAA   84 Target Full Sequence	2.5	Sequence 1364 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235433.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:59   AUUUAGGGACUAAAAUGGAAUAAA   82 Target Full Sequence	2.5	Sequence 1428 from Patent EP2985353	NA	coding protein	psRNATarget
HI403303.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:59   AUUUAGGGACUAAAAUGGAAUAAA   82 Target Full Sequence	2.5	Sequence 1428 from Patent EP2074227	NA	coding protein	psRNATarget
JB163764.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:59   AUUUAGGGACUAAAAUGGAAUAAA   82 Target Full Sequence	2.5	Sequence 1428 from Patent EP2559767	NA	coding protein	psRNATarget
JB163791.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:58   AUUUAGGGACUAAAAUGGAAUAAA   81 Target Full Sequence	2.5	Sequence 1455 from Patent EP2559767	NA	coding protein	psRNATarget
HI403330.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:58   AUUUAGGGACUAAAAUGGAAUAAA   81 Target Full Sequence	2.5	Sequence 1455 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235460.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*|||||||||=||||||| targets:58   AUUUAGGGACUAAAAUGGAAUAAA   81 Target Full Sequence	2.5	Sequence 1455 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||*||||||*|||||||||||| targets:1650   AUUUUGUGACUUAAAUAGAAUAAA   1673 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT083561.2	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||*||||*|||||||||||| targets:286   AUUUAGGGACUUAAAUAGAAUAAA   309 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   |||||**||||||||||||||||| targets:153   AUUUAUAGACUAAAAUAGAAUAAA   176 Target Full Sequence	2.0	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||*||||||*|||||||||||| targets:113   AUUUUGUGACUUAAAUAGAAUAAA   136 Target Full Sequence	1.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||*||||||*|||||||||||| targets:113   AUUUUGUGACUUAAAUAGAAUAAA   136 Target Full Sequence	1.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||*||||||*|||||||||||| targets:113   AUUUUGUGACUUAAAUAGAAUAAA   136 Target Full Sequence	1.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235549.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||**|||||||||||||||| targets:77   AUUUAGAAACUAAAAUAGAAUAAA   100 Target Full Sequence	2.0	Sequence 1544 from Patent EP2985353	NA	coding protein	psRNATarget
JB163770.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||**|||||||||||||||| targets:77   AUUUAGAAACUAAAAUAGAAUAAA   100 Target Full Sequence	2.0	Sequence 1434 from Patent EP2559767	NA	coding protein	psRNATarget
JB163880.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||**|||||||||||||||| targets:77   AUUUAGAAACUAAAAUAGAAUAAA   100 Target Full Sequence	2.0	Sequence 1544 from Patent EP2559767	NA	coding protein	psRNATarget
HI403309.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||**|||||||||||||||| targets:77   AUUUAGAAACUAAAAUAGAAUAAA   100 Target Full Sequence	2.0	Sequence 1434 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235439.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||**|||||||||||||||| targets:77   AUUUAGAAACUAAAAUAGAAUAAA   100 Target Full Sequence	2.0	Sequence 1434 from Patent EP2985353	NA	coding protein	psRNATarget
HI403419.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   ||||||**|||||||||||||||| targets:77   AUUUAGAAACUAAAAUAGAAUAAA   100 Target Full Sequence	2.0	Sequence 1544 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546127.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   |||||**||=|||||||||||||| targets:1502   AUUUAUAGAUUAAAAUAGAAUAAA   1525 Target Full Sequence	3.0	PREDICTED: Zea mays myb-related protein 330 (LOC103642827), mRNA	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   |||||***|||||||||||||||| targets:113   AUUUAUACACUAAAAUAGAAUAAA   136 Target Full Sequence	3.0	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   |||||***|||||||||||||||| targets:113   AUUUAUACACUAAAAUAGAAUAAA   136 Target Full Sequence	3.0	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:24   UAAAUCACUGAUUUUAUCUUAUUU   1   |||||***|||||||||||||||| targets:113   AUUUAUACACUAAAAUAGAAUAAA   136 Target Full Sequence	3.0	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget