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BaseInfo

ncRNA ID	novel_zma_miR5738
Species	Zea mays
Class	miRNA
Genome position	Chr5:163722999-163723138 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647343
Length	24
Mature sequence(if miRNA)	117 - GGACUCCCAAACUAGCCCUAAGGG - 140
Stem-loop(if miRNA)	--  A               AC A       - A  U           U         C  C        U   CU AGGGUUAGUUUGGGA  C CAAAACC G AG GGAUUGGAGGG CUAAAAUUC CU CUUAUUCA U   || |||||||||||||||  | ||||||| | || ||||||||||| ||||||||| || ||||||||   GA UCCCGAUCAAACCCU  G GUUUUGG C UC CCUAAUCUUCC GAUUUUAAG GA GAAUAAGU U GG  A               CA -       G A  U           C         U  A        U
Stem-loop sequence	CUAAGGGUUAGUUUGGGAACCACAAAACCGAAGUGGAUUGGAGGGUCUAAAAUUCCCUCCUUAUUCAUUUUUGAAUAAGAAGUGAAUUUUAGCCCUUCUAAUCCUCUACGGGUUUUGGACUCCCAAACUAGCCCUAAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406214.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   |=||*||||||||||||||||||* targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28 Target Full Sequence	1.0	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
JB166675.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   |=||*||||||||||||||||||* targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28 Target Full Sequence	1.0	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   |=||*||||||||||||||||||* targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28 Target Full Sequence	1.0	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   |=||*||||||||||||||||||* targets:2422   CUCUAAGGGCUAGUUUGGGAGUCA   2445 Target Full Sequence	1.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   |=||*||||||||||||||||||* targets:2440   CUCUAAGGGCUAGUUUGGGAGUCA   2463 Target Full Sequence	1.0	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666769.2	ncRNA:24   GGGAAU-CCCGAUCAAACCCUCAGG   1   |||*||-|||||||||||||||||* targets:1583   CCCCUACGGGCUAGUUUGGGAGUCA   1607 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY111263.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   |=||*|||||||||||||||*||* targets:314   CUCUAAGGGCUAGUUUGGGACUCN   337 Target Full Sequence	2.5	Zea mays CL8731_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   *=||*||||||||||||*|||||| targets:2073   AUCUAAGGGCUAGUUUGAGAGUCC   2096 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
HI402993.1	ncRNA:19   UCCCGAUCAAACCCUCAGG   1   ||||||||||||||||||* targets:1   AGGGCUAGUUUGGGAGUCA   19 Target Full Sequence	1.0	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:19   UCCCGAUCAAACCCUCAGG   1   ||||||||||||||||||* targets:1   AGGGCUAGUUUGGGAGUCA   19 Target Full Sequence	1.0	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
JB163454.1	ncRNA:19   UCCCGAUCAAACCCUCAGG   1   ||||||||||||||||||* targets:1   AGGGCUAGUUUGGGAGUCA   19 Target Full Sequence	1.0	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
BT067022.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   =*||*||||||||||||*|||||* targets:1322   UGCUAAGGGCUAGUUUGAGAGUCA   1345 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0156K10 mRNA, complete cds	NA	coding protein	psRNATarget
AY105026.1	ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1   =*||*||||||||||||*|||||* targets:1263   UGCUAAGGGCUAGUUUGAGAGUCA   1286 Target Full Sequence	2.5	Zea mays PCO062519 mRNA sequence	NA	coding protein	psRNATarget