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BaseInfo

ncRNA ID novel_zma_miR5738
Species Zea mays
Class miRNA
Genome position Chr5:163722999-163723138 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647343
Length 24
Mature sequence(if miRNA) 117 - GGACUCCCAAACUAGCCCUAAGGG - 140
Stem-loop(if miRNA) --  A               AC A       - A  U           U         C  C        U
  CU AGGGUUAGUUUGGGA  C CAAAACC G AG GGAUUGGAGGG CUAAAAUUC CU CUUAUUCA U
  || |||||||||||||||  | ||||||| | || ||||||||||| ||||||||| || ||||||||
  GA UCCCGAUCAAACCCU  G GUUUUGG C UC CCUAAUCUUCC GAUUUUAAG GA GAAUAAGU U
GG  A               CA -       G A  U           C         U  A        U
Stem-loop sequence CUAAGGGUUAGUUUGGGAACCACAAAACCGAAGUGGAUUGGAGGGUCUAAAAUUCCCUCCUUAUUCAUUUUUGAAUAAGAAGUGAAUUUUAGCCCUUCUAAUCCUCUACGGGUUUUGGACUCCCAAACUAGCCCUAAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI406214.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  |=||*||||||||||||||||||*
targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28

1.0 Sequence 4339 from Patent EP2074227 NA coding protein psRNATarget
JB166675.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  |=||*||||||||||||||||||*
targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28

1.0 Sequence 4339 from Patent EP2559767 NA coding protein psRNATarget
LQ238344.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  |=||*||||||||||||||||||*
targets:5   CUCUAAGGGCUAGUUUGGGAGUCA   28

1.0 Sequence 4339 from Patent EP2985353 NA coding protein psRNATarget
XM_008677028.2
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  |=||*||||||||||||||||||*
targets:2422   CUCUAAGGGCUAGUUUGGGAGUCA   2445

1.0 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550525.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  |=||*||||||||||||||||||*
targets:2440   CUCUAAGGGCUAGUUUGGGAGUCA   2463

1.0 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666769.2
ncRNA:24   GGGAAU-CCCGAUCAAACCCUCAGG   1
  |||*||-|||||||||||||||||*
targets:1583   CCCCUACGGGCUAGUUUGGGAGUCA   1607

3.0 PREDICTED: Zea mays uncharacterized LOC103643607 (LOC103643607), transcript variant X1, mRNA NA coding protein psRNATarget
AY111263.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  |=||*|||||||||||||||*||*
targets:314   CUCUAAGGGCUAGUUUGGGACUCN   337

2.5 Zea mays CL8731_1 mRNA sequence NA coding protein psRNATarget
XM_020550478.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  *=||*||||||||||||*||||||
targets:2073   AUCUAAGGGCUAGUUUGAGAGUCC   2096

1.5 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
HI402993.1
ncRNA:19   UCCCGAUCAAACCCUCAGG   1
  ||||||||||||||||||*
targets:1   AGGGCUAGUUUGGGAGUCA   19

1.0 Sequence 1118 from Patent EP2074227 NA coding protein psRNATarget
LQ235123.1
ncRNA:19   UCCCGAUCAAACCCUCAGG   1
  ||||||||||||||||||*
targets:1   AGGGCUAGUUUGGGAGUCA   19

1.0 Sequence 1118 from Patent EP2985353 NA coding protein psRNATarget
JB163454.1
ncRNA:19   UCCCGAUCAAACCCUCAGG   1
  ||||||||||||||||||*
targets:1   AGGGCUAGUUUGGGAGUCA   19

1.0 Sequence 1118 from Patent EP2559767 NA coding protein psRNATarget
BT067022.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  =*||*||||||||||||*|||||*
targets:1322   UGCUAAGGGCUAGUUUGAGAGUCA   1345

2.5 Zea mays full-length cDNA clone ZM_BFb0156K10 mRNA, complete cds NA coding protein psRNATarget
AY105026.1
ncRNA:24   GGGAAUCCCGAUCAAACCCUCAGG   1
  =*||*||||||||||||*|||||*
targets:1263   UGCUAAGGGCUAGUUUGAGAGUCA   1286

2.5 Zea mays PCO062519 mRNA sequence NA coding protein psRNATarget