Search result

BaseInfo

ncRNA ID	novel_zma_miR5737
Species	Zea mays
Class	miRNA
Genome position	Chr10:101012103-101012319 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647385;SRR2647387;SRR2647390
Length	24
Mature sequence(if miRNA)	194 - ACCUCGGCGCCAAUGAUGAUGACG - 217
Stem-loop(if miRNA)	--C           A           CA             --  AUA                           G        A                       AG    CGUCAUCAUUG CGCCGAGGUAA  CAUAGUGGCGCCA  AC   AUUGGCGCCAACUUUUCCUACGUGGCA CCGAUGUG CAAGUCUCAGGGGGUCGGCGCCA  A    ||||||||||| |||||||||||  |||||||||||||  ||   ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  U    GUAGUAGUAAC GCGGCUCCAUU  GUGUCGCUGCGGU  UG   UAACCGCGGUUGAAAAGGAUGCACCGU GGCUACAC GUUUAGGGUCUCCCAGCUGCGGU  U GCA           C           UC             CA  --G                           G        C                       AU
Stem-loop sequence	CCGUCAUCAUUGACGCCGAGGUAACACAUAGUGGCGCCAACAUAAUUGGCGCCAACUUUUCCUACGUGGCAGCCGAUGUGACAAGUCUCAGGGGGUCGGCGCCAAGAUUUAUGGCGUCGACCCUCUGGGAUUUGCCACAUCGGGUGCCACGUAGGAAAAGUUGGCGCCAAUGGUACUGGCGUCGCUGUGCUUUACCUCGGCGCCAAUGAUGAUGACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407183.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||||||||||||||||||||||*| targets:1   CGUCAUCAUCAUUGGCGCCGAGAU   24 Target Full Sequence	1.5	Sequence 5308 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239313.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||||||||||||||||||||||*| targets:1   CGUCAUCAUCAUUGGCGCCGAGAU   24 Target Full Sequence	1.5	Sequence 5308 from Patent EP2985353	NA	coding protein	psRNATarget
JB167644.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||||||||||||||||||||||*| targets:1   CGUCAUCAUCAUUGGCGCCGAGAU   24 Target Full Sequence	1.5	Sequence 5308 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239316.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||*||||||||*|||||||||||| targets:6   CGCCAUCAUCAAUGGCGCCGAGGU   29 Target Full Sequence	1.5	Sequence 5311 from Patent EP2985353	NA	coding protein	psRNATarget
JB167647.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||*||||||||*|||||||||||| targets:6   CGCCAUCAUCAAUGGCGCCGAGGU   29 Target Full Sequence	1.5	Sequence 5311 from Patent EP2559767	NA	coding protein	psRNATarget
HI407186.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||*||||||||*|||||||||||| targets:6   CGCCAUCAUCAAUGGCGCCGAGGU   29 Target Full Sequence	1.5	Sequence 5311 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539868.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||*|||||||||||||||||||*| targets:18   CGCCAUCAUCAUUGGCGCCGAGCU   41 Target Full Sequence	1.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103630924), mRNA	NA	coding protein	psRNATarget
XM_020551058.1	ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1   ||*|||||||||||||||||||*| targets:18   CGCCAUCAUCAUUGGCGCCGAGCU   41 Target Full Sequence	1.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109945220), mRNA	NA	coding protein	psRNATarget