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BaseInfo

ncRNA ID novel_zma_miR5737
Species Zea mays
Class miRNA
Genome position Chr10:101012103-101012319 [+]
Reference genome RefGen_v4
Source SRR2647221;SRR2647385;SRR2647387;SRR2647390
Length 24
Mature sequence(if miRNA) 194 - ACCUCGGCGCCAAUGAUGAUGACG - 217
Stem-loop(if miRNA) --C           A           CA             --  AUA                           G        A                       AG
   CGUCAUCAUUG CGCCGAGGUAA  CAUAGUGGCGCCA  AC   AUUGGCGCCAACUUUUCCUACGUGGCA CCGAUGUG CAAGUCUCAGGGGGUCGGCGCCA  A
   ||||||||||| |||||||||||  |||||||||||||  ||   ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  U
   GUAGUAGUAAC GCGGCUCCAUU  GUGUCGCUGCGGU  UG   UAACCGCGGUUGAAAAGGAUGCACCGU GGCUACAC GUUUAGGGUCUCCCAGCUGCGGU  U
GCA           C           UC             CA  --G                           G        C                       AU
Stem-loop sequence CCGUCAUCAUUGACGCCGAGGUAACACAUAGUGGCGCCAACAUAAUUGGCGCCAACUUUUCCUACGUGGCAGCCGAUGUGACAAGUCUCAGGGGGUCGGCGCCAAGAUUUAUGGCGUCGACCCUCUGGGAUUUGCCACAUCGGGUGCCACGUAGGAAAAGUUGGCGCCAAUGGUACUGGCGUCGCUGUGCUUUACCUCGGCGCCAAUGAUGAUGACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI407183.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||||||||||||||||||||||*|
targets:1   CGUCAUCAUCAUUGGCGCCGAGAU   24

1.5 Sequence 5308 from Patent EP2074227 NA coding protein psRNATarget
LQ239313.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||||||||||||||||||||||*|
targets:1   CGUCAUCAUCAUUGGCGCCGAGAU   24

1.5 Sequence 5308 from Patent EP2985353 NA coding protein psRNATarget
JB167644.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||||||||||||||||||||||*|
targets:1   CGUCAUCAUCAUUGGCGCCGAGAU   24

1.5 Sequence 5308 from Patent EP2559767 NA coding protein psRNATarget
LQ239316.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||*||||||||*||||||||||||
targets:6   CGCCAUCAUCAAUGGCGCCGAGGU   29

1.5 Sequence 5311 from Patent EP2985353 NA coding protein psRNATarget
JB167647.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||*||||||||*||||||||||||
targets:6   CGCCAUCAUCAAUGGCGCCGAGGU   29

1.5 Sequence 5311 from Patent EP2559767 NA coding protein psRNATarget
HI407186.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||*||||||||*||||||||||||
targets:6   CGCCAUCAUCAAUGGCGCCGAGGU   29

1.5 Sequence 5311 from Patent EP2074227 NA coding protein psRNATarget
XM_020539868.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||*|||||||||||||||||||*|
targets:18   CGCCAUCAUCAUUGGCGCCGAGCU   41

1.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103630924), mRNA NA coding protein psRNATarget
XM_020551058.1
ncRNA:24   GCAGUAGUAGUAACCGCGGCUCCA   1
  ||*|||||||||||||||||||*|
targets:18   CGCCAUCAUCAUUGGCGCCGAGCU   41

1.5 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109945220), mRNA NA coding protein psRNATarget