ncRNA ID | novel_zma_miR5737 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr10:101012103-101012319 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647221;SRR2647385;SRR2647387;SRR2647390 |
Length | 24 |
Mature sequence(if miRNA) | 194 - ACCUCGGCGCCAAUGAUGAUGACG - 217 |
Stem-loop(if miRNA) |
--C           A           CA             --  AUA                           G        A                       AG    CGUCAUCAUUG CGCCGAGGUAA  CAUAGUGGCGCCA  AC   AUUGGCGCCAACUUUUCCUACGUGGCA CCGAUGUG CAAGUCUCAGGGGGUCGGCGCCA  A    ||||||||||| |||||||||||  |||||||||||||  ||   ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  U    GUAGUAGUAAC GCGGCUCCAUU  GUGUCGCUGCGGU  UG   UAACCGCGGUUGAAAAGGAUGCACCGU GGCUACAC GUUUAGGGUCUCCCAGCUGCGGU  U GCA           C           UC             CA  --G                           G        C                       AU |
Stem-loop sequence | CCGUCAUCAUUGACGCCGAGGUAACACAUAGUGGCGCCAACAUAAUUGGCGCCAACUUUUCCUACGUGGCAGCCGAUGUGACAAGUCUCAGGGGGUCGGCGCCAAGAUUUAUGGCGUCGACCCUCUGGGAUUUGCCACAUCGGGUGCCACGUAGGAAAAGUUGGCGCCAAUGGUACUGGCGUCGCUGUGCUUUACCUCGGCGCCAAUGAUGAUGACG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
HI407183.1 |
|
1.5 | Sequence 5308 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
LQ239313.1 |
|
1.5 | Sequence 5308 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
JB167644.1 |
|
1.5 | Sequence 5308 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
LQ239316.1 |
|
1.5 | Sequence 5311 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
JB167647.1 |
|
1.5 | Sequence 5311 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
HI407186.1 |
|
1.5 | Sequence 5311 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
XM_020539868.1 |
|
1.5 | PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103630924), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020551058.1 |
|
1.5 | PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109945220), mRNA | NA | coding protein | psRNATarget |