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BaseInfo

ncRNA ID	novel_zma_miR5736
Species	Zea mays
Class	miRNA
Genome position	Chr4:129479709-129479895 [+]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647387;SRR2647388
Length	24
Mature sequence(if miRNA)	164 - AGAUCUUGUUCGGUUAAUCCCGUU - 187
Stem-loop(if miRNA)	--   U     C  A     --C   ---AAU  AAUAUAGCUAAGGUAAAAGUAAUUAAGUGUGAAUGACUGAAUAUAUAAAUAUUAAAUCAUAUC   CGG GAUUA AC UGAGC   AUC      GC                                                               U   ||| ||||| || |||||   |||      ||                                                               G   GCC CUAAU UG GCUUG   UAG      CC                                                               U UU   -     -  -     UUC   AAUACA  UUUGCGUCUCAAGGAAUCUUUUAUCACUUACACACUAACUGGGUUAGUAUCUAUCAAGUAGAC
Stem-loop sequence	CGGUGAUUACACAUGAGCCAUCAAUGCAAUAUAGCUAAGGUAAAAGUAAUUAAGUGUGAAUGACUGAAUAUAUAAAUAUUAAAUCAUAUCUGUCAGAUGAACUAUCUAUGAUUGGGUCAAUCACACAUUCACUAUUUUCUAAGGAACUCUGCGUUUCCACAUAAGAUCUUGUUCGGUUAAUCCCGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646410.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   |||*||||||||||||||||*||| targets:10   AACAGGAUUAACCGAACAAGUUCU   33 Target Full Sequence	1.5	PREDICTED: Zea mays probable WRKY transcription factor 2 (LOC103626027), mRNA	NA	coding protein	psRNATarget
EZ074510.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=||||*|||||||||||||*|| targets:70   AAUGGGAAUAACCGAACAAGACCU   93 Target Full Sequence	2.5	TSA: Zea mays contig10147, mRNA sequence	NA	coding protein	psRNATarget
BT084790.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=||||*|||||||||||||*|| targets:1133   AAUGGGAAUAACCGAACAAGACCU   1156 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0181D14 mRNA, complete cds	NA	coding protein	psRNATarget
BT066344.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=||||*|||||||||||||*|| targets:2972   AAUGGGAAUAACCGAACAAGACCU   2995 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0346C18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175804.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=||||*|||||||||||||*|| targets:2972   AAUGGGAAUAACCGAACAAGACCU   2995 Target Full Sequence	2.5	Zea mays putative ARF GTPase activating domain protein with ankyrin repeat-containing protein (LOC100383138), mRNA	NA	coding protein	psRNATarget
EZ101889.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=*|||*|||||||||||||*|| targets:67   AAUUGGAAUAACCGAACAAGAGCU   90 Target Full Sequence	2.5	TSA: Zea mays contig37545, mRNA sequence	NA	coding protein	psRNATarget
XM_008665323.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   =|=*|||*||||||||||||=||| targets:1201   GAUAGGAAUAACCGAACAAGGUCU   1224 Target Full Sequence	2.5	PREDICTED: Zea mays myb-related protein Zm1-like (LOC103642011), mRNA	NA	coding protein	psRNATarget
EZ076130.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=|*||*|||||||||||||*|| targets:75   AAUGAGAAUAACCGAACAAGACCU   98 Target Full Sequence	2.5	TSA: Zea mays contig11767, mRNA sequence	NA	coding protein	psRNATarget
HI405821.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=*|||*|||||||||||||*|| targets:116   AAUAGGAAUAACCGAACAAGACCU   139 Target Full Sequence	2.5	Sequence 3946 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237951.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=*|||*|||||||||||||*|| targets:116   AAUAGGAAUAACCGAACAAGACCU   139 Target Full Sequence	2.5	Sequence 3946 from Patent EP2985353	NA	coding protein	psRNATarget
JB166282.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=*|||*|||||||||||||*|| targets:116   AAUAGGAAUAACCGAACAAGACCU   139 Target Full Sequence	2.5	Sequence 3946 from Patent EP2559767	NA	coding protein	psRNATarget
JB167769.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   |*=||||*||||||||||||*||| targets:117   AUUGGGAAUAACCGAACAAGCUCU   140 Target Full Sequence	2.5	Sequence 5433 from Patent EP2559767	NA	coding protein	psRNATarget
HI407308.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   |*=||||*||||||||||||*||| targets:117   AUUGGGAAUAACCGAACAAGCUCU   140 Target Full Sequence	2.5	Sequence 5433 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239438.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   |*=||||*||||||||||||*||| targets:117   AUUGGGAAUAACCGAACAAGCUCU   140 Target Full Sequence	2.5	Sequence 5433 from Patent EP2985353	NA	coding protein	psRNATarget
BT070056.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   |*=||||*|||||||||||||*|| targets:865   AUUGGGAAUAACCGAACAAGACCU   888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0374H10 mRNA, complete cds	NA	coding protein	psRNATarget
AY103687.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   |*=||||*|||||||||||||*|| targets:1176   AUUGGGAAUAACCGAACAAGACCU   1199 Target Full Sequence	2.5	Zea mays PCO106710 mRNA sequence	NA	coding protein	psRNATarget
XM_008658927.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=|*||*||||||||||*||||| targets:431   AAUGAGAAUAACCGAACAUGAUCU   454 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA	NA	coding protein	psRNATarget
BT068806.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1353   AA--GGAAUAACCGAACAAGGUCU   1374 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0384C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176601.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1353   AA--GGAAUAACCGAACAAGGUCU   1374 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383988 (LOC100383988), mRNA	NA	coding protein	psRNATarget
XM_020549933.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1378   AA--GGAAUAACCGAACAAGGUCU   1399 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383988 (LOC100383988), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020549932.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1378   AA--GGAAUAACCGAACAAGGUCU   1399 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383988 (LOC100383988), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651215.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||=*|||*|||||||||||||*|| targets:481   AAUAGGAAUAACCGAACAAGACCU   504 Target Full Sequence	2.5	PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA	NA	coding protein	psRNATarget
XM_008675021.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1378   AA--GGAAUAACCGAACAAGGUCU   1399 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383988 (LOC100383988), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008675018.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1378   AA--GGAAUAACCGAACAAGGUCU   1399 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383988 (LOC100383988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675023.2	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1378   AA--GGAAUAACCGAACAAGGUCU   1399 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383988 (LOC100383988), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549931.1	ncRNA:24   UUGCCCUAAUUGGCUUGUUCUAGA   1   ||--|||*||||||||||||=||| targets:1378   AA--GGAAUAACCGAACAAGGUCU   1399 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383988 (LOC100383988), transcript variant X6, mRNA	NA	coding protein	psRNATarget