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BaseInfo

ncRNA ID novel_zma_miR5731
Species Zea mays
Class miRNA
Genome position Chr4:26317470-26317607 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 25
Mature sequence(if miRNA) 1 - AGGUGUAUCUUCUUUUUCGGAAGUC - 25
Stem-loop(if miRNA) --                          A                                    CUAG
  UUUCCGAAAAAGAAGAUGCACCUUGU GGUAUGAGUACUCUAUUAAUUCUAUUAAGCCUUGGG    G
  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
  GAAGGCUUUUUCUUCUAUGUGGAACA CCAUACUCAUGAGAUAAUUAAGAUAAUUCGGAACCC    A
CU                          A                                    CUAU
Stem-loop sequence UUUCCGAAAAAGAAGAUGCACCUUGUAGGUAUGAGUACUCUAUUAAUUCUAUUAAGCCUUGGGCUAGGAUAUCCCCAAGGCUUAAUAGAAUUAAUAGAGUACUCAUACCAACAAGGUGUAUCUUCUUUUUCGGAAGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038952.1
ncRNA:25   CUGA----A---GGCUUUUUCUUCUAUGUGGA   1
  *|||----|---=||||||||=|||||||||*
targets:1444   CACUGAGAUAAGUCGAAAAAGGAGAUACACCG   1475

2.5 Zea mays full-length cDNA clone ZM_BFb0345D11 mRNA, complete cds NA coding protein psRNATarget
NM_001147032.1
ncRNA:25   CUGA----A---GGCUUUUUCUUCUAUGUGGA   1
  *|||----|---=||||||||=|||||||||*
targets:1444   CACUGAGAUAAGUCGAAAAAGGAGAUACACCG   1475

2.5 Zea mays putative B3 DNA binding domain family protein (LOC100272565), mRNA NA coding protein psRNATarget