Search result

BaseInfo

ncRNA ID novel_zma_miR5730
Species Zea mays
Class miRNA
Genome position Chr5:159041259-159041414 [-]
Reference genome RefGen_v4
Source SRR1618883
Length 20
Mature sequence(if miRNA) 1 - AUCUGAGAUCGAGUGAAGCU - 20
Stem-loop(if miRNA) ---C    C        C   G   -        -------------       ----        -G    U  U  UAUUGU  UGA
    UCGC CGAUCUCG GGU CUG GUAGCGGU             GAAAAUG    UAGCGAGA  AAAU CG GU      CU   U
    |||| |||||||| ||| ||| ||||||||             |||||||    ||||||||  |||| || ||      ||
    AGUG GCUAGAGU CUA GAC UAUUGUCG             CUUUUAU    GUCGCUUU  UUUG GC CA      GA   U
UCGA    A        -   -   G        UUGUCUUCUUCUU       UUUA        AG    U  U  UCUUGU  UAU
Stem-loop sequence CUCGCCCGAUCUCGCGGUGCUGGUAGCGGUGAAAAUGUAGCGAGAGAAAUUCGUGUUAUUGUCUUGAUUUAUAGUGUUCUACUCGUGUUUGAUUUCGCUGAUUUUAUUUUCUUCUUCUUCUGUUGCUGUUAUGCAGAUCUGAGAUCGAGUGAAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020541262.1
ncRNA:20   UCGAAGUGAGCUAGAGUCUA   1
  *||||**|||||||||||||
targets:436   UGCUUAUCUCGAUCUCAGAU   455

2.0 PREDICTED: Zea mays hypothetical protein (LOC103632763), mRNA NA coding protein psRNATarget