ncRNA ID | novel_zma_miR5730 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:159041259-159041414 [-] |
Reference genome | RefGen_v4 |
Source | SRR1618883 |
Length | 20 |
Mature sequence(if miRNA) | 1 - AUCUGAGAUCGAGUGAAGCU - 20 |
Stem-loop(if miRNA) |
---C    C        C   G   -        -------------       ----        -G    U  U  UAUUGU  UGA     UCGC CGAUCUCG GGU CUG GUAGCGGU             GAAAAUG    UAGCGAGA  AAAU CG GU      CU   U     |||| |||||||| ||| ||| ||||||||             |||||||    ||||||||  |||| || ||      ||     AGUG GCUAGAGU CUA GAC UAUUGUCG             CUUUUAU    GUCGCUUU  UUUG GC CA      GA   U UCGA    A        -   -   G        UUGUCUUCUUCUU       UUUA        AG    U  U  UCUUGU  UAU |
Stem-loop sequence | CUCGCCCGAUCUCGCGGUGCUGGUAGCGGUGAAAAUGUAGCGAGAGAAAUUCGUGUUAUUGUCUUGAUUUAUAGUGUUCUACUCGUGUUUGAUUUCGCUGAUUUUAUUUUCUUCUUCUUCUGUUGCUGUUAUGCAGAUCUGAGAUCGAGUGAAGCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020541262.1 |
|
2.0 | PREDICTED: Zea mays hypothetical protein (LOC103632763), mRNA | NA | coding protein | psRNATarget |