| ncRNA ID | ath-miR837-5p |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr1:6520941-6521124 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 55 - AUCAGUUUCUUGUUCGUUUCA - 75 |
| Stem-loop(if miRNA) |
U C C A U C A UUUU UU UUUUGAUAAAUA UUUUGUUUG UUACAAGUAUAAAGUC UCAUGUUUUUU CAUCAGUUU UUGUUCGUUUCAA AUUAUGA UGU A |||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||| ||| AAGAUUAUUUAU AAAAUAAAU AAUGUUCAUAUUUCAG AGUACAAAAAG GUAGUCAAA AACAAGCAAAGUU UAAUACU ACA C A A A G - A C ---C UU |
| Stem-loop sequence | UUUUUGAUAAAUACUUUUGUUUGCUUACAAGUAUAAAGUCAUCAUGUUUUUUUCAUCAGUUUCUUGUUCGUUUCAAAAUUAUGAUUUUUGUUUACUUACACUCAUAAUCUUGAAACGAACAAAAAACUGAUGGAAAAACAUGAGGACUUUAUACUUGUAAAUAAAUAAAAAUAUUUAUUAGAAA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AF446356.1 |
|
2.0 | Arabidopsis thaliana At1g67230/F1N21_5 mRNA sequence | NA | coding protein | psRNATarget | |||||||||
| AK230454.1 |
|
2.0 | Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL26-01-N20 | NA | coding protein | psRNATarget | |||||||||
| NM_105392.5 |
|
2.0 | Arabidopsis thaliana little nuclei1 (LINC1), mRNA | little nuclei1(LINC1) | coding protein | psRNATarget |
| 1 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |
| 2 | PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010). |