Search result

BaseInfo

ncRNA ID	novel_zma_miR5729
Species	Zea mays
Class	miRNA
Genome position	Chr4:34568639-34568707 [-]
Reference genome	RefGen_v4
Source	SRR2647221
Length	23
Mature sequence(if miRNA)	47 - GAUCCAUGGGGAGGAAUCCUCUU - 69
Stem-loop(if miRNA)	--           -              U     A   GAUCCAUGGGG AGGAAUCCUCUUGU AUUCA A   ||||||||||| |||||||||||||| |||||   CUAGGUACCCC UCUUUAGGGGAACG UAAGU A CC           C              U     U
Stem-loop sequence	GAUCCAUGGGGAGGAAUCCUCUUGUUAUUCAAAAUUGAAUUGCAAGGGGAUUUCUCCCCCAUGGAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167373.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76 Target Full Sequence	0.0	Sequence 5037 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239042.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76 Target Full Sequence	0.0	Sequence 5037 from Patent EP2985353	NA	coding protein	psRNATarget
HI406912.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76 Target Full Sequence	0.0	Sequence 5037 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238863.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||=|||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUC   84 Target Full Sequence	1.5	Sequence 4858 from Patent EP2985353	NA	coding protein	psRNATarget
JB167194.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||=|||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUC   84 Target Full Sequence	1.5	Sequence 4858 from Patent EP2559767	NA	coding protein	psRNATarget
HI406733.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||=|||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUC   84 Target Full Sequence	1.5	Sequence 4858 from Patent EP2074227	NA	coding protein	psRNATarget
EU948260.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||=|||||||||||| targets:393   AAGGGGAUUCUUCCCCAUGGAUC   415 Target Full Sequence	1.5	Zea mays clone 371984 mRNA sequence	NA	coding protein	psRNATarget
BT068562.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   =||=||||||||||||||||||| targets:1046   GAGGGGAUUCCUCCCCAUGGAUC   1068 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667073.2	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||||||= targets:3360   AAGGGGAUUCCUCCCCAUGGAUU   3382 Target Full Sequence	1.0	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667075.2	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||||||= targets:3376   AAGGGGAUUCCUCCCCAUGGAUU   3398 Target Full Sequence	1.0	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667074.2	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||||||= targets:3380   AAGGGGAUUCCUCCCCAUGGAUU   3402 Target Full Sequence	1.0	PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI410249.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   ||||*|||||||||||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70 Target Full Sequence	1.0	Sequence 8374 from Patent EP2074227	NA	coding protein	psRNATarget
JB170710.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   ||||*|||||||||||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70 Target Full Sequence	1.0	Sequence 8374 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242379.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   ||||*|||||||||||||||||| targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70 Target Full Sequence	1.0	Sequence 8374 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:23   UUCUCCUAAGGAGGGG-UACCUAG   1   |||=||||||||||||-||||||| targets:120   AAGGGGAUUCCUCCCCCAUGGAUC   143 Target Full Sequence	3.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
LQ235458.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||*|||| targets:53   AAGGGGAUUCCUCCCCAUAGAUC   75 Target Full Sequence	1.5	Sequence 1453 from Patent EP2985353	NA	coding protein	psRNATarget
HI403328.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||*|||| targets:53   AAGGGGAUUCCUCCCCAUAGAUC   75 Target Full Sequence	1.5	Sequence 1453 from Patent EP2074227	NA	coding protein	psRNATarget
JB163789.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=||||||||||||||*|||| targets:53   AAGGGGAUUCCUCCCCAUAGAUC   75 Target Full Sequence	1.5	Sequence 1453 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=|*||||||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105 Target Full Sequence	1.0	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
JB163408.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=|*||||||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105 Target Full Sequence	1.0	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
HI402947.1	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=|*||||||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105 Target Full Sequence	1.0	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008660085.2	ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1   |||=|*||||||||=|||||||| targets:1492   AAGGGAAUUCCUCCUCAUGGAUC   1514 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274129 (LOC100274129), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649119.2	ncRNA:23   UUCUCCUAAGGAGGGG-UACCUAG   1   |||-||||||||||||-||||||| targets:4   AAG-GGAUUCCUCCCCCAUGGAUC   26 Target Full Sequence	3.0	PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA	NA	coding protein	psRNATarget