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BaseInfo

ncRNA ID novel_zma_miR5729
Species Zea mays
Class miRNA
Genome position Chr4:34568639-34568707 [-]
Reference genome RefGen_v4
Source SRR2647221
Length 23
Mature sequence(if miRNA) 47 - GAUCCAUGGGGAGGAAUCCUCUU - 69
Stem-loop(if miRNA) --           -              U     A
  GAUCCAUGGGG AGGAAUCCUCUUGU AUUCA A
  ||||||||||| |||||||||||||| |||||
  CUAGGUACCCC UCUUUAGGGGAACG UAAGU A
CC           C              U     U
Stem-loop sequence GAUCCAUGGGGAGGAAUCCUCUUGUUAUUCAAAAUUGAAUUGCAAGGGGAUUUCUCCCCCAUGGAUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB167373.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|||||||||||||||||||
targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76

0.0 Sequence 5037 from Patent EP2559767 NA coding protein psRNATarget
LQ239042.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|||||||||||||||||||
targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76

0.0 Sequence 5037 from Patent EP2985353 NA coding protein psRNATarget
HI406912.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|||||||||||||||||||
targets:54   AAGGGGAUUCCUCCCCAUGGAUC   76

0.0 Sequence 5037 from Patent EP2074227 NA coding protein psRNATarget
LQ238863.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||=||||||||||||
targets:62   AAGGGGAUUCUUCCCCAUGGAUC   84

1.5 Sequence 4858 from Patent EP2985353 NA coding protein psRNATarget
JB167194.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||=||||||||||||
targets:62   AAGGGGAUUCUUCCCCAUGGAUC   84

1.5 Sequence 4858 from Patent EP2559767 NA coding protein psRNATarget
HI406733.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||=||||||||||||
targets:62   AAGGGGAUUCUUCCCCAUGGAUC   84

1.5 Sequence 4858 from Patent EP2074227 NA coding protein psRNATarget
EU948260.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||=||||||||||||
targets:393   AAGGGGAUUCUUCCCCAUGGAUC   415

1.5 Zea mays clone 371984 mRNA sequence NA coding protein psRNATarget
BT068562.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  =||=|||||||||||||||||||
targets:1046   GAGGGGAUUCCUCCCCAUGGAUC   1068

0.0 Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds NA coding protein psRNATarget
XM_008667073.2
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||||||||||||||=
targets:3360   AAGGGGAUUCCUCCCCAUGGAUU   3382

1.0 PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008667075.2
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||||||||||||||=
targets:3376   AAGGGGAUUCCUCCCCAUGGAUU   3398

1.0 PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008667074.2
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||||||||||||||=
targets:3380   AAGGGGAUUCCUCCCCAUGGAUU   3402

1.0 PREDICTED: Zea mays exportin-2 (LOC103643902), transcript variant X2, mRNA NA coding protein psRNATarget
HI410249.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  ||||*||||||||||||||||||
targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70

1.0 Sequence 8374 from Patent EP2074227 NA coding protein psRNATarget
JB170710.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  ||||*||||||||||||||||||
targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70

1.0 Sequence 8374 from Patent EP2559767 NA coding protein psRNATarget
LQ242379.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  ||||*||||||||||||||||||
targets:48   AAGAUGAUUCCUCCCCAUGGAUC   70

1.0 Sequence 8374 from Patent EP2985353 NA coding protein psRNATarget
XM_020545246.1
ncRNA:23   UUCUCCUAAGGAGGGG-UACCUAG   1
  |||=||||||||||||-|||||||
targets:120   AAGGGGAUUCCUCCCCCAUGGAUC   143

3.0 PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA NA coding protein psRNATarget
LQ235458.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||||||||||*||||
targets:53   AAGGGGAUUCCUCCCCAUAGAUC   75

1.5 Sequence 1453 from Patent EP2985353 NA coding protein psRNATarget
HI403328.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||||||||||*||||
targets:53   AAGGGGAUUCCUCCCCAUAGAUC   75

1.5 Sequence 1453 from Patent EP2074227 NA coding protein psRNATarget
JB163789.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=||||||||||||||*||||
targets:53   AAGGGGAUUCCUCCCCAUAGAUC   75

1.5 Sequence 1453 from Patent EP2559767 NA coding protein psRNATarget
LQ235077.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|*|||||||||||||||||
targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105

1.0 Sequence 1072 from Patent EP2985353 NA coding protein psRNATarget
JB163408.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|*|||||||||||||||||
targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105

1.0 Sequence 1072 from Patent EP2559767 NA coding protein psRNATarget
HI402947.1
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|*|||||||||||||||||
targets:83   AAGGGUAUUCCUCCCCAUGGAUC   105

1.0 Sequence 1072 from Patent EP2074227 NA coding protein psRNATarget
XM_008660085.2
ncRNA:23   UUCUCCUAAGGAGGGGUACCUAG   1
  |||=|*||||||||=||||||||
targets:1492   AAGGGAAUUCCUCCUCAUGGAUC   1514

2.5 PREDICTED: Zea mays uncharacterized LOC100274129 (LOC100274129), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008649119.2
ncRNA:23   UUCUCCUAAGGAGGGG-UACCUAG   1
  |||-||||||||||||-|||||||
targets:4   AAG-GGAUUCCUCCCCCAUGGAUC   26

3.0 PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA NA coding protein psRNATarget