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BaseInfo

ncRNA ID	novel_zma_miR5728
Species	Zea mays
Class	miRNA
Genome position	Chr4:37416315-37416371 [-]
Reference genome	RefGen_v4
Source	SRR2647221;SRR2647386;SRR2647388;SRR2647389;SRR2647390;SRR2647391
Length	24
Mature sequence(if miRNA)	34 - GAUUUUUAUUUUCCCAAGGGAAAU - 57
Stem-loop(if miRNA)	--  U   U     C          UUA   GA UUU AUUUU CCAAGGGAAA   G   || ||| ||||| ||||||||||   U   CU GAA UAAAA GGUUCUCUUU   C CC  U   U     A          UAC
Stem-loop sequence	GAUUUUUAUUUUCCCAAGGGAAAUUAGUCCAUUUUCUCUUGGAAAAAUUAAGUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008660198.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||||||||||||||||||||| targets:972   AUUUCCCUUGGGAAAAUAAAAAUC   995 Target Full Sequence	0.0	PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ069250.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||||||||||||||||||||| targets:125   AUUUCCCUUGGGAAAAUAAAAAUC   148 Target Full Sequence	0.0	TSA: Zea mays contig04885, mRNA sequence	NA	coding protein	psRNATarget
XM_008675357.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||||||||||||||=|||||| targets:173   AUUUCCCUUGGGAAAAUGAAAAUC   196 Target Full Sequence	1.5	PREDICTED: Zea mays UNE1 (LOC103649618), mRNA	NA	coding protein	psRNATarget
EU957492.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||||||||||||||=||||| targets:1747   AUUUCCCUUGGGAAAAUAGAAAUC   1770 Target Full Sequence	1.5	Zea mays clone 1594874 mRNA sequence	NA	coding protein	psRNATarget
JB166927.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||||||||||||||=|||||| targets:63   AUUUCCCUUGGGAAAAUGAAAAUC   86 Target Full Sequence	1.5	Sequence 4591 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238596.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||||||||||||||=|||||| targets:63   AUUUCCCUUGGGAAAAUGAAAAUC   86 Target Full Sequence	1.5	Sequence 4591 from Patent EP2985353	NA	coding protein	psRNATarget
HI406466.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||||||||||||||=|||||| targets:63   AUUUCCCUUGGGAAAAUGAAAAUC   86 Target Full Sequence	1.5	Sequence 4591 from Patent EP2074227	NA	coding protein	psRNATarget
EU950348.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   |||||=|||||||||||=|||||| targets:939   AUUUCUCUUGGGAAAAUGAAAAUC   962 Target Full Sequence	2.5	Zea mays clone 489779 mRNA sequence	NA	coding protein	psRNATarget
NM_001150835.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||=||||||||||||=|||||| targets:939   AUUUUCCUUGGGAAAAUGAAAAUC   962 Target Full Sequence	1.5	Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), mRNA	NA	coding protein	psRNATarget
EU967323.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||=||||||||||||=|||||| targets:939   AUUUUCCUUGGGAAAAUGAAAAUC   962 Target Full Sequence	1.5	Zea mays clone 301481 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544941.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||=|||||| targets:1612   UUUUCCCUUGGGAAAAUGAAAAUC   1635 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||=|||||| targets:1526   UUUUCCCUUGGGAAAAUGAAAAUC   1549 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||=|||||| targets:1483   UUUUCCCUUGGGAAAAUGAAAAUC   1506 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||=|||||| targets:1482   UUUUCCCUUGGGAAAAUGAAAAUC   1505 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||=|||||| targets:1439   UUUUCCCUUGGGAAAAUGAAAAUC   1462 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001150806.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||||=|||| targets:1023   UUUUCCCUUGGGAAAAUAAGAAUC   1046 Target Full Sequence	1.5	Zea mays Tyrosine specific protein phosphatase-like (LOC100277156), mRNA	NA	coding protein	psRNATarget
EU967093.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||||=|||| targets:973   UUUUCCCUUGGGAAAAUAAGAAUC   996 Target Full Sequence	1.5	Zea mays clone 299427 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT084259.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||||||||||||=|||| targets:977   UUUUCCCUUGGGAAAAUAAGAAUC   1000 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658839.2	ncRNA:24   UAAAGGGAACCCUUUUA-UUUUUAG   1   ||||=||||||||||||-||||||| targets:1197   AUUUUCCUUGGGAAAAUGAAAAAUC   1221 Target Full Sequence	3.0	PREDICTED: Zea mays protein STRICTOSIDINE SYNTHASE-LIKE 10 (LOC103636496), mRNA	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||=|||||||||||||=||||| targets:805   UUUUUCCUUGGGAAAAUAGAAAUC   828 Target Full Sequence	1.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542480.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||=|=||||||||||||||||= targets:3691   UUUUUCUUUGGGAAAAUAAAAAUU   3714 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542481.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||=|=||||||||||||||||= targets:3655   UUUUUCUUUGGGAAAAUAAAAAUU   3678 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542482.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||=|=||||||||||||||||= targets:3643   UUUUUCUUUGGGAAAAUAAAAAUU   3666 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542483.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||=|=||||||||||||||||= targets:3154   UUUUUCUUUGGGAAAAUAAAAAUU   3177 Target Full Sequence	2.0	PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008652877.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   =|||=|||||*||||||||||||| targets:2360   GUUUUCCUUGAGAAAAUAAAAAUC   2383 Target Full Sequence	1.0	PREDICTED: Zea mays D-2-hydroxyglutarate dehydrogenase mitochondrial (si618066c08), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001147050.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||==|||||*|||||||||||| targets:768   AUUUUUCUUGGAAAAAUAAAAAUC   791 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100272587), mRNA	NA	coding protein	psRNATarget
BT038997.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||==|||||*|||||||||||| targets:768   AUUUUUCUUGGAAAAAUAAAAAUC   791 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550095.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||||*|*|||||||||||| targets:178   UUUUCCCUUAGAAAAAUAAAAAUC   201 Target Full Sequence	2.5	PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551309.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1152   AUUUCCGUUGGUAAAAUAAAAAUC   1175 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001139247.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1288   AUUUCCGUUGGUAAAAUAAAAAUC   1311 Target Full Sequence	2.5	Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 1, mRNA	NA	coding protein	psRNATarget
XM_008678410.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1307   AUUUCCGUUGGUAAAAUAAAAAUC   1330 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551308.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1228   AUUUCCGUUGGUAAAAUAAAAAUC   1251 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551310.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1061   AUUUCCGUUGGUAAAAUAAAAAUC   1084 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT064838.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1120   AUUUCCGUUGGUAAAAUAAAAAUC   1143 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0201G15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175321.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1120   AUUUCCGUUGGUAAAAUAAAAAUC   1143 Target Full Sequence	2.5	Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT018700.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:1190   AUUUCCGUUGGUAAAAUAAAAAUC   1213 Target Full Sequence	2.5	Zea mays clone EL01N0515A01.d mRNA sequence	NA	coding protein	psRNATarget
EU949735.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:139   AUUUCCGUUGGUAAAAUAAAAAUC   162 Target Full Sequence	2.5	Zea mays clone 442739 mRNA sequence	NA	coding protein	psRNATarget
EU947743.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||||*||||*|||||||||||| targets:88   AUUUCCGUUGGUAAAAUAAAAAUC   111 Target Full Sequence	2.5	Zea mays clone 356079 mRNA sequence	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||==||||||||||||*||||| targets:2389   UUUUUUCUUGGGAAAAUAUAAAUC   2412 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *|||==||||||||||||*||||| targets:2371   UUUUUUCUUGGGAAAAUAUAAAUC   2394 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546085.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||=||||*|*|||||||||||| targets:4474   AUUUUCCUUAGAAAAAUAAAAAUC   4497 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008664818.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||=||||*|*|||||||||||| targets:4455   AUUUUCCUUAGAAAAAUAAAAAUC   4478 Target Full Sequence	2.5	PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008665063.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3906   UUUUCCCAAGGGAAAAUAAAAAUC   3929 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665062.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3880   UUUUCCCAAGGGAAAAUAAAAAUC   3903 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665066.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3774   UUUUCCCAAGGGAAAAUAAAAAUC   3797 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008665064.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3745   UUUUCCCAAGGGAAAAUAAAAAUC   3768 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665068.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3728   UUUUCCCAAGGGAAAAUAAAAAUC   3751 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008665065.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3719   UUUUCCCAAGGGAAAAUAAAAAUC   3742 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665067.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3702   UUUUCCCAAGGGAAAAUAAAAAUC   3725 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020545579.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3613   UUUUCCCAAGGGAAAAUAAAAAUC   3636 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008665071.2	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||||**||||||||||||||| targets:3596   UUUUCCCAAGGGAAAAUAAAAAUC   3619 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020549784.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   ||||==|||**||||||||||||| targets:1518   AUUUUUCUUUAGAAAAUAAAAAUC   1541 Target Full Sequence	3.0	PREDICTED: Zea mays YLS9 (LOC100284750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069035.1	ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1   *||||=|*|*|||||||||||||| targets:1200   UUUUCUCCUAGGAAAAUAAAAAUC   1223 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0149K09 mRNA, complete cds	NA	coding protein	psRNATarget