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BaseInfo

ncRNA ID novel_zma_miR5728
Species Zea mays
Class miRNA
Genome position Chr4:37416315-37416371 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647386;SRR2647388;SRR2647389;SRR2647390;SRR2647391
Length 24
Mature sequence(if miRNA) 34 - GAUUUUUAUUUUCCCAAGGGAAAU - 57
Stem-loop(if miRNA) --  U   U     C          UUA
  GA UUU AUUUU CCAAGGGAAA   G
  || ||| ||||| ||||||||||   U
  CU GAA UAAAA GGUUCUCUUU   C
CC  U   U     A          UAC
Stem-loop sequence GAUUUUUAUUUUCCCAAGGGAAAUUAGUCCAUUUUCUCUUGGAAAAAUUAAGUUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008660198.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||||||||||||||||||||
targets:972   AUUUCCCUUGGGAAAAUAAAAAUC   995

0.0 PREDICTED: Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), transcript variant X1, mRNA NA coding protein psRNATarget
EZ069250.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||||||||||||||||||||
targets:125   AUUUCCCUUGGGAAAAUAAAAAUC   148

0.0 TSA: Zea mays contig04885, mRNA sequence NA coding protein psRNATarget
XM_008675357.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  |||||||||||||||||=||||||
targets:173   AUUUCCCUUGGGAAAAUGAAAAUC   196

1.5 PREDICTED: Zea mays UNE1 (LOC103649618), mRNA NA coding protein psRNATarget
EU957492.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||||||||||||||=|||||
targets:1747   AUUUCCCUUGGGAAAAUAGAAAUC   1770

1.5 Zea mays clone 1594874 mRNA sequence NA coding protein psRNATarget
JB166927.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  |||||||||||||||||=||||||
targets:63   AUUUCCCUUGGGAAAAUGAAAAUC   86

1.5 Sequence 4591 from Patent EP2559767 NA coding protein psRNATarget
LQ238596.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  |||||||||||||||||=||||||
targets:63   AUUUCCCUUGGGAAAAUGAAAAUC   86

1.5 Sequence 4591 from Patent EP2985353 NA coding protein psRNATarget
HI406466.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  |||||||||||||||||=||||||
targets:63   AUUUCCCUUGGGAAAAUGAAAAUC   86

1.5 Sequence 4591 from Patent EP2074227 NA coding protein psRNATarget
EU950348.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  |||||=|||||||||||=||||||
targets:939   AUUUCUCUUGGGAAAAUGAAAAUC   962

2.5 Zea mays clone 489779 mRNA sequence NA coding protein psRNATarget
NM_001150835.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||=||||||||||||=||||||
targets:939   AUUUUCCUUGGGAAAAUGAAAAUC   962

1.5 Zea mays ER membrane protein complex subunit 7-like protein (LOC100277198), mRNA NA coding protein psRNATarget
EU967323.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||=||||||||||||=||||||
targets:939   AUUUUCCUUGGGAAAAUGAAAAUC   962

1.5 Zea mays clone 301481 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020544941.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||=||||||
targets:1612   UUUUCCCUUGGGAAAAUGAAAAUC   1635

1.5 PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020544939.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||=||||||
targets:1526   UUUUCCCUUGGGAAAAUGAAAAUC   1549

1.5 PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544940.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||=||||||
targets:1483   UUUUCCCUUGGGAAAAUGAAAAUC   1506

1.5 PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544942.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||=||||||
targets:1482   UUUUCCCUUGGGAAAAUGAAAAUC   1505

1.5 PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020544943.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||=||||||
targets:1439   UUUUCCCUUGGGAAAAUGAAAAUC   1462

1.5 PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA NA coding protein psRNATarget
NM_001150806.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||||=||||
targets:1023   UUUUCCCUUGGGAAAAUAAGAAUC   1046

1.5 Zea mays Tyrosine specific protein phosphatase-like (LOC100277156), mRNA NA coding protein psRNATarget
EU967093.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||||=||||
targets:973   UUUUCCCUUGGGAAAAUAAGAAUC   996

1.5 Zea mays clone 299427 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT084259.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||||||||||||=||||
targets:977   UUUUCCCUUGGGAAAAUAAGAAUC   1000

1.5 Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds NA coding protein psRNATarget
XM_008658839.2
ncRNA:24   UAAAGGGAACCCUUUUA-UUUUUAG   1
  ||||=||||||||||||-|||||||
targets:1197   AUUUUCCUUGGGAAAAUGAAAAAUC   1221

3.0 PREDICTED: Zea mays protein STRICTOSIDINE SYNTHASE-LIKE 10 (LOC103636496), mRNA NA coding protein psRNATarget
XM_020541969.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||=|||||||||||||=|||||
targets:805   UUUUUCCUUGGGAAAAUAGAAAUC   828

1.5 PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542480.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||=|=||||||||||||||||=
targets:3691   UUUUUCUUUGGGAAAAUAAAAAUU   3714

2.0 PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542481.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||=|=||||||||||||||||=
targets:3655   UUUUUCUUUGGGAAAAUAAAAAUU   3678

2.0 PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542482.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||=|=||||||||||||||||=
targets:3643   UUUUUCUUUGGGAAAAUAAAAAUU   3666

2.0 PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542483.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||=|=||||||||||||||||=
targets:3154   UUUUUCUUUGGGAAAAUAAAAAUU   3177

2.0 PREDICTED: Zea mays protein TPR1-like (LOC103634695), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008652877.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  =|||=|||||*|||||||||||||
targets:2360   GUUUUCCUUGAGAAAAUAAAAAUC   2383

1.0 PREDICTED: Zea mays D-2-hydroxyglutarate dehydrogenase mitochondrial (si618066c08), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001147050.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||==|||||*||||||||||||
targets:768   AUUUUUCUUGGAAAAAUAAAAAUC   791

2.5 Zea mays hypothetical protein (LOC100272587), mRNA NA coding protein psRNATarget
BT038997.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||==|||||*||||||||||||
targets:768   AUUUUUCUUGGAAAAAUAAAAAUC   791

2.5 Zea mays full-length cDNA clone ZM_BFb0348F03 mRNA, complete cds NA coding protein psRNATarget
XM_020550095.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||||*|*||||||||||||
targets:178   UUUUCCCUUAGAAAAAUAAAAAUC   201

2.5 PREDICTED: Zea mays putative nuclease HARBI1 (LOC103649690), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551309.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1152   AUUUCCGUUGGUAAAAUAAAAAUC   1175

2.5 PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001139247.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1288   AUUUCCGUUGGUAAAAUAAAAAUC   1311

2.5 Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 1, mRNA NA coding protein psRNATarget
XM_008678410.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1307   AUUUCCGUUGGUAAAAUAAAAAUC   1330

2.5 PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020551308.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1228   AUUUCCGUUGGUAAAAUAAAAAUC   1251

2.5 PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551310.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1061   AUUUCCGUUGGUAAAAUAAAAAUC   1084

2.5 PREDICTED: Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant X4, mRNA NA coding protein psRNATarget
BT064838.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1120   AUUUCCGUUGGUAAAAUAAAAAUC   1143

2.5 Zea mays full-length cDNA clone ZM_BFb0201G15 mRNA, complete cds NA coding protein psRNATarget
NM_001175321.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1120   AUUUCCGUUGGUAAAAUAAAAAUC   1143

2.5 Zea mays Cysteine proteinases superfamily protein (LOC100194202), transcript variant 2, mRNA NA coding protein psRNATarget
BT018700.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:1190   AUUUCCGUUGGUAAAAUAAAAAUC   1213

2.5 Zea mays clone EL01N0515A01.d mRNA sequence NA coding protein psRNATarget
EU949735.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:139   AUUUCCGUUGGUAAAAUAAAAAUC   162

2.5 Zea mays clone 442739 mRNA sequence NA coding protein psRNATarget
EU947743.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||||*||||*||||||||||||
targets:88   AUUUCCGUUGGUAAAAUAAAAAUC   111

2.5 Zea mays clone 356079 mRNA sequence NA coding protein psRNATarget
XM_020550525.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||==||||||||||||*|||||
targets:2389   UUUUUUCUUGGGAAAAUAUAAAUC   2412

2.5 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008677028.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *|||==||||||||||||*|||||
targets:2371   UUUUUUCUUGGGAAAAUAUAAAUC   2394

2.5 PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546085.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||=||||*|*||||||||||||
targets:4474   AUUUUCCUUAGAAAAAUAAAAAUC   4497

2.5 PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008664818.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||=||||*|*||||||||||||
targets:4455   AUUUUCCUUAGAAAAAUAAAAAUC   4478

2.5 PREDICTED: Zea mays putative inactive disease susceptibility protein LOV1 (LOC103641468), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008665063.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3906   UUUUCCCAAGGGAAAAUAAAAAUC   3929

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008665062.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3880   UUUUCCCAAGGGAAAAUAAAAAUC   3903

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008665066.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3774   UUUUCCCAAGGGAAAAUAAAAAUC   3797

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008665064.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3745   UUUUCCCAAGGGAAAAUAAAAAUC   3768

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008665068.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3728   UUUUCCCAAGGGAAAAUAAAAAUC   3751

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008665065.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3719   UUUUCCCAAGGGAAAAUAAAAAUC   3742

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008665067.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3702   UUUUCCCAAGGGAAAAUAAAAAUC   3725

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020545579.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3613   UUUUCCCAAGGGAAAAUAAAAAUC   3636

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008665071.2
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||||**|||||||||||||||
targets:3596   UUUUCCCAAGGGAAAAUAAAAAUC   3619

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020549784.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  ||||==|||**|||||||||||||
targets:1518   AUUUUUCUUUAGAAAAUAAAAAUC   1541

3.0 PREDICTED: Zea mays YLS9 (LOC100284750), transcript variant X1, mRNA NA coding protein psRNATarget
BT069035.1
ncRNA:24   UAAAGGGAACCCUUUUAUUUUUAG   1
  *||||=|*|*||||||||||||||
targets:1200   UUUUCUCCUAGGAAAAUAAAAAUC   1223

3.0 Zea mays full-length cDNA clone ZM_BFb0149K09 mRNA, complete cds NA coding protein psRNATarget