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BaseInfo

ncRNA ID novel_zma_miR5726
Species Zea mays
Class miRNA
Genome position Chr4:70243398-70243582 [-]
Reference genome RefGen_v4
Source SRR2647221;SRR2647343;SRR2647467
Length 24
Mature sequence(if miRNA) 162 - AAAAAGCUAGCCUGAUAGGGGGUU - 185
Stem-loop(if miRNA) --             G       G   A          A               UC                                    U
  AAAAAGCUAGCCU AUAGGGG UUG ACCCUCAACC UAUAAAUCAUGCUUU  CACUCUCACCAGACAAUGUGGGACUAUUCCCAACAA G
  ||||||||||||| ||||||| ||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||
  UUUUUCGAUCGGA UAUCCCC AAC UGGGAGUUGG AUAUUUGGUACGAAA  GUGAGAGUGGUUUGUUACACCCUGAUAAGGGUUGUU A
GG             G       -   G          A               GU                                    A
Stem-loop sequence AAAAAGCUAGCCUGAUAGGGGGUUGAACCCUCAACCAUAUAAAUCAUGCUUUUCCACUCUCACCAGACAAUGUGGGACUAUUCCCAACAAUGAAUUGUUGGGAAUAGUCCCACAUUGUUUGGUGAGAGUGUGAAAGCAUGGUUUAUAAGGUUGAGGGUGCAACCCCUAUGAGGCUAGCUUUUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664926.2
ncRNA:24   UUGGGGGAUAGUCCGAUCGAAAAA   1
  ||||||||||||||||||||||||
targets:288   AACCCCCUAUCAGGCUAGCUUUUU   311

0.0 PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 6 (LOC103641588), mRNA NA coding protein psRNATarget
XM_008664926.2
ncRNA:24   UUGGGGGAUAGUCCGAUCGAAAAA   1
  ||||||||||||||||||=|||||
targets:590   AACCCCCUAUCAGGCUAGUUUUUU   613

1.5 PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 6 (LOC103641588), mRNA NA coding protein psRNATarget