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BaseInfo

ncRNA ID novel_zma_miR5723
Species Zea mays
Class miRNA
Genome position Chr5:186579300-186579484 [-]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 162 - CUCAGCUUGGCACACCGGACUGUC - 185
Stem-loop(if miRNA) --- U   CU    A        U        GUG         GU             ---   U      U     CUC  UGCUCUCGGGACUC
   C CAG  UGGC CACCGGAC GUCCGGUG   CACCGGACA  GUCCGGUGCACUA   GAC GGUCCG GUGAA   GC              G
   | |||  |||| |||||||| ||||||||   |||||||||  |||||||||||||   ||| |||||| |||||   ||
   G GUC  ACUG GUGGCCUG CAGGCCAC   GUGGCCUGU  CAGGCCACGUGGU   CUG CCAGGC CACUU   AU              A
GCG C   -U    A        U        GUG         --             GGC   -      -     AAA  CGGCAUACGGCGGC
Stem-loop sequence CUCAGCUUGGCACACCGGACUGUCCGGUGGUGCACCGGACAGUGUCCGGUGCACUAGACUGGUCCGUGUGAACUCGCUGCUCUCGGGACUCGACGGCGGCAUACGGCUAAAAUUCACCGGACCGUCCGGUGGUGCACCGGACUGUCCGGUGGUGCACCGGACUGUCCGGUGAGUCAUCUGCGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066461.2
ncRNA:24   CUGUCAGGCCACACGGUUCGACUC   1
  ||||||||||||||||||||*|||
targets:863   GACAGUCCGGUGUGCCAAGCCGAG   886

1.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget