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BaseInfo

ncRNA ID novel_zma_miR5712
Species Zea mays
Class miRNA
Genome position Chr4:139730192-139730264 [+]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 50 - GGUAAUCUGGAACGGAACGGUUCU - 73
Stem-loop(if miRNA) --         -A   CU    -     A       CG
  AGCCGUUCC  UCC  GAUU CUAGG ACGGAGC  C
  |||||||||  |||  |||| ||||| |||||||
  UUGGCAAGG  AGG  CUAA GGUUU UGUCUUG  U
UC         CA   -U    U     G       UC
Stem-loop sequence AGCCGUUCCAUCCCUGAUUCUAGGAACGGAGCCGCUCUGUUCUGUGUUUGGUAAUCUGGAACGGAACGGUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542520.1
ncRNA:24   UCUUGGCAAGGCAAGGUCUAAUGG   1
  |||=|*|*||||||||||||||||
targets:1698   AGAGCGGCUCCGUUCCAGAUUACC   1721

2.0 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA NA coding protein psRNATarget