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BaseInfo

ncRNA ID novel_zma_miR5699
Species Zea mays
Class miRNA
Genome position Chr5:206872186-206872297 [-]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 89 - CUCACAUUCGUGACCUGUAGGCCC - 112
Stem-loop(if miRNA) --                     C    --A        UCACAA      --   AACA
  CUCACAUUCGUGACCUGUAGG CCAC   AACAGAAG      GAAGCC  CCA    A
  ||||||||||||||||||||| ||||   ||||||||      ||||||  |||
  GAGUGUAAGCACUGGACGUCC GGUG   UUGUUUUU      CUUCGG  GGU    C
GG                     C    CAC        ----UA      AU   GAAC
Stem-loop sequence CUCACAUUCGUGACCUGUAGGCCCACAAACAGAAGUCACAAGAAGCCCCAAACAACCAAGUGGUAGGCUUCAUUUUUUGUUCACGUGGCCCUGCAGGUCACGAAUGUGAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654183.2
ncRNA:24   CCCGGAUGUCCAGUGCUUACACUC   1
  |||=||=|||*|||||||||||||
targets:2979   GGGUCUGCAGAUCACGAAUGUGAG   3002

2.0 PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At4g37250 (LOC103632364), mRNA NA coding protein psRNATarget