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BaseInfo

ncRNA ID	novel_zma_miR5694
Species	Zea mays
Class	miRNA
Genome position	Chr4:169864887-169864968 [+]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	1 - CUCCUUCCGUUUCUUUUUAGUUGU - 24
Stem-loop(if miRNA)	--             U                     U  A   CUCCUUCCGUUUC UUUUAGUUGUCGCUGGAUAGU CA U   ||||||||||||| ||||||||||||||||||||| ||   GAGGGAGGCAAAG AAAAUCAACAGCGACCUAUCA GU U AU             C                     C  U
Stem-loop sequence	CUCCUUCCGUUUCUUUUUAGUUGUCGCUGGAUAGUUCAAUUUUGCACUAUCCAGCGACAACUAAAACGAAACGGAGGGAGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239360.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:64   ACAACUAAAAAGAAACGGAGGGAG   87 Target Full Sequence	1.5	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:64   ACAACUAAAAAGAAACGGAGGGAG   87 Target Full Sequence	1.5	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:64   ACAACUAAAAAGAAACGGAGGGAG   87 Target Full Sequence	1.5	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:629   ACAACUAAAAAGAAACGGAGGGAG   652 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:45   ACAACUAAAAAGAAACGGAGGGAG   68 Target Full Sequence	1.5	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:1220   ACAACUAAAAAGAAACGGAGGGAG   1243 Target Full Sequence	1.5	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:1573   ACAACUAAAAAGAAACGGAGGGAG   1596 Target Full Sequence	1.5	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:1573   ACAACUAAAAAGAAACGGAGGGAG   1596 Target Full Sequence	1.5	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:1209   ACAACUAAAAAGAAACGGAGGGAG   1232 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||=|||| targets:2586   ACAACUAAAAAGAAACGGAGGGAG   2609 Target Full Sequence	1.5	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||||||||||||*||| targets:365   ACAACUAAAAAGAAACGGAAAGAG   388 Target Full Sequence	1.5	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
NM_001196908.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||||||| targets:812   ACAAAUAAAAAGAAACGGAAGGAG   835 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502430 (LOC100502430), mRNA	NA	coding protein	psRNATarget
BT088136.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||||||| targets:812   ACAAAUAAAAAGAAACGGAAGGAG   835 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0030P23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677351.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||||||| targets:2115   ACAACUAAAACGAAACGGAAGGAG   2138 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103651662), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||*|||| targets:2171   ACAACUAAAAAGAAACGGAUGGAG   2194 Target Full Sequence	1.5	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||||||||||||||||||*|||| targets:2171   ACAACUAAAAAGAAACGGAUGGAG   2194 Target Full Sequence	1.5	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
LQ242091.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 8086 from Patent EP2985353	NA	coding protein	psRNATarget
JB170476.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 8140 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242145.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 8140 from Patent EP2985353	NA	coding protein	psRNATarget
JB170422.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 8086 from Patent EP2559767	NA	coding protein	psRNATarget
HI409699.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAGUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 7824 from Patent EP2074227	NA	coding protein	psRNATarget
HI408945.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 7070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241075.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 7070 from Patent EP2985353	NA	coding protein	psRNATarget
HI409961.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 8086 from Patent EP2074227	NA	coding protein	psRNATarget
HI408618.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 6743 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241829.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAGUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 7824 from Patent EP2985353	NA	coding protein	psRNATarget
JB169079.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 6743 from Patent EP2559767	NA	coding protein	psRNATarget
JB170160.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAGUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 7824 from Patent EP2559767	NA	coding protein	psRNATarget
HI410015.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 8140 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240748.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 6743 from Patent EP2985353	NA	coding protein	psRNATarget
JB169406.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGGGAG   85 Target Full Sequence	1.5	Sequence 7070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239435.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||*|||||||||||||||=|||| targets:64   ACAUCUAAAAAGAAACGGAGGGAG   87 Target Full Sequence	1.5	Sequence 5430 from Patent EP2985353	NA	coding protein	psRNATarget
JB167766.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||*|||||||||||||||=|||| targets:64   ACAUCUAAAAAGAAACGGAGGGAG   87 Target Full Sequence	1.5	Sequence 5430 from Patent EP2559767	NA	coding protein	psRNATarget
HI407305.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||*|||||||||||||||=|||| targets:64   ACAUCUAAAAAGAAACGGAGGGAG   87 Target Full Sequence	1.5	Sequence 5430 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:69   ACAACUAAAAUGAAACGGAGGGAG   92 Target Full Sequence	2.5	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
HI403287.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:69   ACAACUAAAAUGAAACGGAGGGAG   92 Target Full Sequence	2.5	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
JB163748.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:69   ACAACUAAAAUGAAACGGAGGGAG   92 Target Full Sequence	2.5	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
EZ067019.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:5   ACAAAUAAAAAGAAACGGAGGGAG   28 Target Full Sequence	1.5	TSA: Zea mays contig02653, mRNA sequence	NA	coding protein	psRNATarget
JB167780.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:229   ACAACUAAAACGAAACGGAGGGAG   252 Target Full Sequence	2.5	Sequence 5444 from Patent EP2559767	NA	coding protein	psRNATarget
HI407319.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:229   ACAACUAAAACGAAACGGAGGGAG   252 Target Full Sequence	2.5	Sequence 5444 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239449.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:229   ACAACUAAAACGAAACGGAGGGAG   252 Target Full Sequence	2.5	Sequence 5444 from Patent EP2985353	NA	coding protein	psRNATarget
EU964901.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:555   ACAAAUAAAAAGAAACGGAGGGAG   578 Target Full Sequence	1.5	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
EU952378.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:771   ACAACUAAAACGAAACGGAGGGAG   794 Target Full Sequence	2.5	Zea mays clone 1278936 mitochondrial import inner membrane translocase subunit TIM14 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU974849.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:627   ACAAAUAAAAAGAAACGGAGGGAG   650 Target Full Sequence	1.5	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:627   ACAAAUAAAAAGAAACGGAGGGAG   650 Target Full Sequence	1.5	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
BT060817.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:288   ACAAAUAAAAAGAAACGGAGGGAG   311 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds	NA	coding protein	psRNATarget
BT065083.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:264   ACAACUAAAACGAAACGGAGGGAG   287 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0081B22 mRNA, complete cds	NA	coding protein	psRNATarget
BT062074.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1195   ACAACUAAAAUGAAACGGAGGGAG   1218 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0212O02 mRNA, complete cds	NA	coding protein	psRNATarget
EU968044.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||*|||||||||||||||=|||| targets:1082   ACAUCUAAAAAGAAACGGAGGGAG   1105 Target Full Sequence	1.5	Zea mays clone 313382 adenylyl-sulfate kinase 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT035546.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   |||*|||||||||||||||=|||| targets:970   ACAUCUAAAAAGAAACGGAGGGAG   993 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0068P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU953599.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1283   ACAACUAAAAUGAAACGGAGGGAG   1306 Target Full Sequence	2.5	Zea mays clone 1437867 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682276.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1278   ACAACUAAAAUGAAACGGAGGGAG   1301 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU973774.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1293   ACAACUAAAAUGAAACGGAGGGAG   1316 Target Full Sequence	2.5	Zea mays clone 410704 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1224   ACAAAUAAAAAGAAACGGAGGGAG   1247 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1346   ACAAAUAAAAAGAAACGGAGGGAG   1369 Target Full Sequence	1.5	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1346   ACAAAUAAAAAGAAACGGAGGGAG   1369 Target Full Sequence	1.5	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682289.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1307   ACAACUAAAAUGAAACGGAGGGAG   1330 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008647346.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:199   ACAAAUAAAAAGAAACGGAGGGAG   222 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA	NA	coding protein	psRNATarget
NM_001158647.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1359   ACAACUAAAAUGAAACGGAGGGAG   1382 Target Full Sequence	2.5	Zea mays F-box domain containing protein (LOC100285757), mRNA	NA	coding protein	psRNATarget
EU973763.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1361   ACAACUAAAAUGAAACGGAGGGAG   1384 Target Full Sequence	2.5	Zea mays clone 409560 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651544.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1413   ACAAAUAAAAAGAAACGGAGGGAG   1436 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1330   ACAAAUAAAAAGAAACGGAGGGAG   1353 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008682282.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:1467   ACAACUAAAAUGAAACGGAGGGAG   1490 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT043433.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1403   ACAAAUAAAAAGAAACGGAGGGAG   1426 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0188B19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1585   ACAAAUAAAAAGAAACGGAGGGAG   1608 Target Full Sequence	1.5	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1601   ACAAAUAAAAAGAAACGGAGGGAG   1624 Target Full Sequence	1.5	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
BT066708.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:157   ACAACUAAAACGAAACGGAGGGAG   180 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054D21 mRNA, complete cds	NA	coding protein	psRNATarget
EU957018.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:2058   ACAAAUAAAAAGAAACGGAGGGAG   2081 Target Full Sequence	1.5	Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553332.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2056   ACAACUAAAAUGAAACGGAGGGAG   2079 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020553342.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2087   ACAACUAAAAUGAAACGGAGGGAG   2110 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020553327.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2169   ACAACUAAAAUGAAACGGAGGGAG   2192 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553339.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2200   ACAACUAAAAUGAAACGGAGGGAG   2223 Target Full Sequence	2.5	PREDICTED: Zea mays F-box domain containing protein (LOC100285757), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:2554   ACAAAUAAAAAGAAACGGAGGGAG   2577 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544250.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:2493   ACAAAUAAAAAGAAACGGAGGGAG   2516 Target Full Sequence	1.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546173.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:1521   ACAAAUAAAAAGAAACGGAGGGAG   1544 Target Full Sequence	1.5	PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA	NA	coding protein	psRNATarget
XM_020546615.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:2854   ACAAAUAAAAAGAAACGGAGGGAG   2877 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546614.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:2871   ACAAAUAAAAAGAAACGGAGGGAG   2894 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546612.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:2977   ACAAAUAAAAAGAAACGGAGGGAG   3000 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669143.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2799   ACAACUAAAACGAAACGGAGGGAG   2822 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008669142.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2729   ACAACUAAAACGAAACGGAGGGAG   2752 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008669138.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2861   ACAACUAAAACGAAACGGAGGGAG   2884 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546695.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2277   ACAACUAAAACGAAACGGAGGGAG   2300 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020546613.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*||||||||||||||=|||| targets:3756   ACAAAUAAAAAGAAACGGAGGGAG   3779 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666445.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2277   ACAACUAAAACGAAACGGAGGGAG   2300 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020546694.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2277   ACAACUAAAACGAAACGGAGGGAG   2300 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546685.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2298   ACAACUAAAACGAAACGGAGGGAG   2321 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546687.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2298   ACAACUAAAACGAAACGGAGGGAG   2321 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020546686.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2298   ACAACUAAAACGAAACGGAGGGAG   2321 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546691.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2277   ACAACUAAAACGAAACGGAGGGAG   2300 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020546689.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2236   ACAACUAAAACGAAACGGAGGGAG   2259 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020546683.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2291   ACAACUAAAACGAAACGGAGGGAG   2314 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546684.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2316   ACAACUAAAACGAAACGGAGGGAG   2339 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547479.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:3239   ACAACUAAAACGAAACGGAGGGAG   3262 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547478.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:3239   ACAACUAAAACGAAACGGAGGGAG   3262 Target Full Sequence	2.5	PREDICTED: Zea mays Putative pentatricopeptide repeat-containing protein (LOC100216998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546692.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2277   ACAACUAAAACGAAACGGAGGGAG   2300 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020546693.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||=|||| targets:2215   ACAACUAAAACGAAACGGAGGGAG   2238 Target Full Sequence	2.5	PREDICTED: Zea mays L10-interacting MYB domain-containing protein-like (LOC103643286), transcript variant X11, mRNA	NA	coding protein	psRNATarget
HI409094.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:59   ACAAUUAAAACGAAACGGAGGGAG   82 Target Full Sequence	2.5	Sequence 7219 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241224.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:59   ACAAUUAAAACGAAACGGAGGGAG   82 Target Full Sequence	2.5	Sequence 7219 from Patent EP2985353	NA	coding protein	psRNATarget
JB169555.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:59   ACAAUUAAAACGAAACGGAGGGAG   82 Target Full Sequence	2.5	Sequence 7219 from Patent EP2559767	NA	coding protein	psRNATarget
BT068381.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1167   ACAAUUAAAACGAAACGGAGGGAG   1190 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0135M15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956063.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1120   ACAAUUAAAACGAAACGGAGGGAG   1143 Target Full Sequence	2.5	Zea mays clone 1556707 mRNA sequence	NA	coding protein	psRNATarget
EU973028.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1226   ACAAUUAAAACGAAACGGAGGGAG   1249 Target Full Sequence	2.5	Zea mays clone 391970 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT088158.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1260   ACAAUUAAAACGAAACGGAGGGAG   1283 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038O11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153573.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||=|=|||||||||||*||||||| targets:1204   ACGAUUAAAAAGAAACAGAAGGAG   1227 Target Full Sequence	1.5	Zea mays protein binding protein (LOC100280655), mRNA	NA	coding protein	psRNATarget
EU953133.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||=|=|||||||||||*||||||| targets:1204   ACGAUUAAAAAGAAACAGAAGGAG   1227 Target Full Sequence	1.5	Zea mays clone 1385620 protein binding protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656167.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1279   ACAAUUAAAACGAAACGGAGGGAG   1302 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT035950.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1460   ACAAUUAAAACGAAACGGAGGGAG   1483 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0089G20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138729.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1460   ACAAUUAAAACGAAACGGAGGGAG   1483 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193630 (LOC100193630), mRNA	NA	coding protein	psRNATarget
XM_008656166.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||*||||||||=|||| targets:1324   ACAAUUAAAACGAAACGGAGGGAG   1347 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193630 (LOC100193630), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166319.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:66   ACAACUAAAACGAAACGGAUGGAG   89 Target Full Sequence	2.5	Sequence 3983 from Patent EP2559767	NA	coding protein	psRNATarget
HI405858.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:66   ACAACUAAAACGAAACGGAUGGAG   89 Target Full Sequence	2.5	Sequence 3983 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237988.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:66   ACAACUAAAACGAAACGGAUGGAG   89 Target Full Sequence	2.5	Sequence 3983 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020541158.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:1085   ACAACUAAAACGAAACGGAUGGAG   1108 Target Full Sequence	2.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541157.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:1087   ACAACUAAAACGAAACGGAUGGAG   1110 Target Full Sequence	2.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655254.2	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:1106   ACAACUAAAACGAAACGGAUGGAG   1129 Target Full Sequence	2.5	PREDICTED: Zea mays acid phosphatase 1 (LOC103633566), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||||||||*||||||||*|||| targets:2278   ACAACUAAAACGAAACGGAUGGAG   2301 Target Full Sequence	2.5	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
JB170512.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||**|||||||||||| targets:59   ACAAUUAAAAUAAAACGGAAGGAG   82 Target Full Sequence	2.5	Sequence 8176 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242181.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||**|||||||||||| targets:59   ACAAUUAAAAUAAAACGGAAGGAG   82 Target Full Sequence	2.5	Sequence 8176 from Patent EP2985353	NA	coding protein	psRNATarget
HI410051.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||=|||||**|||||||||||| targets:59   ACAAUUAAAAUAAAACGGAAGGAG   82 Target Full Sequence	2.5	Sequence 8176 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240840.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 6835 from Patent EP2985353	NA	coding protein	psRNATarget
JB169171.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 6835 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242326.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 8321 from Patent EP2985353	NA	coding protein	psRNATarget
HI409328.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 7453 from Patent EP2074227	NA	coding protein	psRNATarget
HI410196.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 8321 from Patent EP2074227	NA	coding protein	psRNATarget
JB169789.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 7453 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241458.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 7453 from Patent EP2985353	NA	coding protein	psRNATarget
HI408710.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 6835 from Patent EP2074227	NA	coding protein	psRNATarget
JB170657.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||||*|||||*||||||||=|||| targets:62   ACAAAUAAAACGAAACGGAGGGAG   85 Target Full Sequence	2.5	Sequence 8321 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001143050.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||*|*||||||||||||||=|||| targets:1142   ACUAAUAAAAAGAAACGGAGGGAG   1165 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA	NA	coding protein	psRNATarget
BT037092.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||*|*||||||||||||||=|||| targets:1142   ACUAAUAAAAAGAAACGGAGGGAG   1165 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||*|*||||||||||||||=|||| targets:3199   ACUAAUAAAAAGAAACGGAGGGAG   3222 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:24   UGUUGAUUUUUCUUUGCCUUCCUC   1   ||*|*||||||||||||||=|||| targets:3208   ACUAAUAAAAAGAAACGGAGGGAG   3231 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget