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BaseInfo

ncRNA ID novel_zma_miR5690
Species Zea mays
Class miRNA
Genome position Chr5:208206074-208206188 [-]
Reference genome RefGen_v4
Source SRR1618883;SRR5100255
Length 24
Mature sequence(if miRNA) 1 - AAAAUGGAAUAAAAUAUAGGGACU - 24
Stem-loop(if miRNA) --     UC          U       -   U                          
  UCCCU  AUUUUAUUCC UUUUAGU CUA AAAUUGCUAAAUAUAGAAAUUAAAAUA
  |||||  |||||||||| ||||||| ||| ||||||||||||||||||||||||||A
  AGGGA  UAAAAUAAGG AAAAUCA GGU UUUAACGGUUUAUAUCUUUGAUUUUGA
UC     UA          U       A   -                          
Stem-loop sequence UCCCUUCAUUUUAUUCCUUUUUAGUCUAUAAAUUGCUAAAUAUAGAAAUUAAAAUAAAGUUUUAGUUUCUAUAUUUGGCAAUUUUGGAACUAAAAUGGAAUAAAAUAUAGGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008667360.2
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||||||||||||=|||||
targets:1068   AGUCCCUAUAUUUUAUUCUAUUUU   1091

1.5 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|||||||||||||||
targets:999   AGUCCCUACAUUUUAUUCCAUUUU   1022

1.0 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
EZ052166.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|||||||||||||||
targets:779   AGUCCCUAGAUUUUAUUCCAUUUU   802

1.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
NM_001112512.2
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|||||||||=|||||
targets:1571   AGUCCCUACAUUUUAUUCUAUUUU   1594

2.5 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||=|||*|||||||||||||||
targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865

1.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||=|||*|||||||||||||||
targets:842   AGUCUCUACAUUUUAUUCCAUUUU   865

1.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||=||||*|||||||||||||||
targets:579   AGUUCCUACAUUUUAUUCCAUUUU   602

1.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|||||||||=|||||
targets:71   AGUCCCUACAUUUUAUUCUAUUUU   94

2.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
BT063047.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122

2.0 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:2099   AGUCCCUUCAUUUUAUUCCAUUUU   2122

2.0 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
XM_008660555.2
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|||||||||||*|||
targets:1917   AGUCCCUACAUUUUAUUCCACUUU   1940

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:294   AGUCCCUCCAUUUUAUUCCAUUUU   317

2.0 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
NM_001147048.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||==||*||||||||||=|||||
targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128

2.5 Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA NA coding protein psRNATarget
BT038994.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||==||*||||||||||=|||||
targets:1105   AGUUUCUCUAUUUUAUUCUAUUUU   1128

2.5 Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds NA coding protein psRNATarget
LQ238843.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192

2.0 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
HI406713.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192

2.0 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192

2.0 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52

2.0 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
LQ235182.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52

2.0 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:29   AGUCCCUUCAUUUUAUUCCAUUUU   52

2.0 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
JB163455.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|*|||||||||||||
targets:29   AGUCCCUACACUUUAUUCCAUUUU   52

2.0 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
HI402994.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|*|||||||||||||
targets:29   AGUCCCUACACUUUAUUCCAUUUU   52

2.0 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
LQ235124.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||||||*|*|||||||||||||
targets:29   AGUCCCUACACUUUAUUCCAUUUU   52

2.0 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101

2.0 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101

2.0 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|||||||||||||||
targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101

2.0 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||=||**|||||||||||||||
targets:2151   AGUCUCUCCAUUUUAUUCCAUUUU   2174

2.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
EU946945.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||=||*||||||||||*|||||
targets:596   AGUCUCUCUAUUUUAUUCAAUUUU   619

2.5 Zea mays clone 325236 mRNA sequence NA coding protein psRNATarget
EU945607.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  |||||||**|*|||||||||||||
targets:143   AGUCCCUCCAAUUUAUUCCAUUUU   166

3.0 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
EU967664.1
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||=||**|*|||||||||||||
targets:1126   AGUCUCUCCACUUUAUUCCAUUUU   1149

3.0 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   UCAGGGAUAUAAAAUAAGGUAAAA   1
  ||||=||**|*|||||||||||||
targets:1126   AGUCUCUCCACUUUAUUCCAUUUU   1149

3.0 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
EU973773.1
ncRNA:24   UCAG-GGAU-AUAAAAUAAGGUAAAA   1
  *||=-||||-||*|||||||||||||
targets:399   UGUUGCCUAGUAGUUUAUUCCAUUUU   424

3.0 Zea mays clone 410666 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
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