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BaseInfo

ncRNA ID	novel_zma_miR5689
Species	Zea mays
Class	miRNA
Genome position	Chr3:129190356-129190470 [+]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647387
Length	24
Mature sequence(if miRNA)	1 - GUGCUCAUUUUUACCCUUAGUUGU - 24
Stem-loop(if miRNA)	--               C                 C   A            -  U U   GUGCUCAUUUUUACC UUAGUUGUGUUUUUUUU UCA UUUUACUCUUCU GU C A   ||||||||||||||| ||||||||||||||||| ||| |||||||||||| || |   CAUGAGUAAAAAUGG AAUCAACACAAAAAAAA AGU AAAAUGGGAAGG CA G U UG               A                 C   C            G  C A
Stem-loop sequence	GUGCUCAUUUUUACCCUUAGUUGUGUUUUUUUUCUCAAUUUUACUCUUCUGUUCUAUAGCACGGGAAGGGUAAAACUGACAAAAAAAACACAACUAAAGGUAAAAAUGAGUACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061928.1	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   |||||||||||||||||||||||| targets:553   ACAACUAAGGGUAAAAAUGAGCAC   576 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679472.2	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   ||=|||||||||||||||*||||| targets:2663   ACGACUAAGGGUAAAAAUAAGCAC   2686 Target Full Sequence	1.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679473.2	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   ||=|||||||||||||||*||||| targets:2866   ACGACUAAGGGUAAAAAUAAGCAC   2889 Target Full Sequence	1.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT088229.1	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   |==||||||||||||||||||*|* targets:1443   AUGACUAAGGGUAAAAAUGAGGAA   1466 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0083G18 mRNA, complete cds	NA	coding protein	psRNATarget
BT062332.1	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   |==||||||||||||||||||*|* targets:1761   AUGACUAAGGGUAAAAAUGAGGAA   1784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0282G11 mRNA, complete cds	NA	coding protein	psRNATarget
BT055615.2	ncRNA:24   UGUUGAUUCCCAUUUUUACUCGUG   1   ||=|||||*|||||||*||||||| targets:108   ACGACUAAAGGUAAAACUGAGCAC   131 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0072O22 mRNA, complete cds	NA	coding protein	psRNATarget