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BaseInfo

ncRNA ID	novel_zma_miR5677
Species	Zea mays
Class	miRNA
Genome position	Chr3:188018345-188018418 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	51 - CCAAGAUCUAUGGCGUCGACCCCU - 74
Stem-loop(if miRNA)	--                     -   UUG U    GCA   CCAAGAUCUAUGGCGUCGACC CCU   G CACG   G   ||||||||||||||||||||| |||   | ||||   GGUUCUAGGUACCGCGGCUGG GGA   C GUGC   U GC                     A   --- U    ACC
Stem-loop sequence	CCAAGAUCUAUGGCGUCGACCCCUUUGGUCACGGCAGUCCACGUGUCAGGAGGUCGGCGCCAUGGAUCUUGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544775.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =|||||||=||||||||||||||| targets:63   GGGGGUCGGCGCCAUAGAUCUUGG   86 Target Full Sequence	1.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =|||||||=||||||||||||||| targets:183   GGGGGUCGGCGCCAUAGAUCUUGG   206 Target Full Sequence	1.0	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_008668233.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =|||||||=|||||*||||||||| targets:243   GGGGGUCGGCGCCACAGAUCUUGG   266 Target Full Sequence	2.5	PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =|||||||=||||||||||||||| targets:129   GGGGGUCGGCGCCAUAGAUCUUGG   152 Target Full Sequence	1.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =|||||||=||||||||||||||| targets:129   GGGGGUCGGCGCCAUAGAUCUUGG   152 Target Full Sequence	1.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|||||||=||||||||||||||| targets:291   CGGGGUCGGCGCCAUAGAUCUUGG   314 Target Full Sequence	1.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020538144.1	ncRNA:24   UC-CCCAGCUGCGGUAUCUAGAACC   1   ||-||||||=||||||||||||||| targets:104   AGAGGGUCGGCGCCAUAGAUCUUGG   128 Target Full Sequence	1.0	PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA	NA	coding protein	psRNATarget
XM_020549155.1	ncRNA:24   UC-CCCAGCUGCGGUAUCUAGAACC   1   ||-||||||=||||||=|||||||| targets:6   AGAGGGUCGGCGCCAUGGAUCUUGG   30 Target Full Sequence	2.5	PREDICTED: Zea mays extensin-like (LOC109944402), mRNA	NA	coding protein	psRNATarget
EU948532.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |*||*|||=||=|||||||||||| targets:435   ACGGCUCGGCGUCAUAGAUCUUGG   458 Target Full Sequence	2.5	Zea mays clone 379687 mRNA sequence	NA	coding protein	psRNATarget
XM_020543999.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |*||*|||=||=|||||||||||| targets:930   ACGGCUCGGCGUCAUAGAUCUUGG   953 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544000.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |*||*|||=||=|||||||||||| targets:936   ACGGCUCGGCGUCAUAGAUCUUGG   959 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276714 (LOC100276714), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:782   CGAGCUCGGCGCCAUAGAUCUUGG   805 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:130   CGAGCUCGGCGCCAUAGAUCUUGG   153 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:1222   CGAGCUCGGCGCCAUAGAUCUUGG   1245 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:128   CGAGCUCGGCGCCAUAGAUCUUGG   151 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:1220   CGAGCUCGGCGCCAUAGAUCUUGG   1243 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:188   CGAGCUCGGCGCCAUAGAUCUUGG   211 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:1279   CGAGCUCGGCGCCAUAGAUCUUGG   1302 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:188   CGAGCUCGGCGCCAUAGAUCUUGG   211 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=||||||||||||||| targets:1279   CGAGCUCGGCGCCAUAGAUCUUGG   1302 Target Full Sequence	1.0	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|***|||=||||||||||||||| targets:64   CGAACUCGGCGCCAUAGAUCUUGG   87 Target Full Sequence	1.0	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|***|||=||||||||||||||| targets:64   CGAACUCGGCGCCAUAGAUCUUGG   87 Target Full Sequence	1.0	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|***|||=||||||||||||||| targets:64   CGAACUCGGCGCCAUAGAUCUUGG   87 Target Full Sequence	1.0	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |****|||=||||||||||||||| targets:282   ACAUCUCGGCGCCAUAGAUCUUGG   305 Target Full Sequence	1.0	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:3   GUACCUCGGCGCCAUAGAUCUUGG   26 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:4   GUACCUCGGCGCCAUAGAUCUUGG   27 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:161   GUACCUCGGCGCCAUAGAUCUUGG   184 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:161   GUACCUCGGCGCCAUAGAUCUUGG   184 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:161   GUACCUCGGCGCCAUAGAUCUUGG   184 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:165   GUACCUCGGCGCCAUAGAUCUUGG   188 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:165   GUACCUCGGCGCCAUAGAUCUUGG   188 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:230   GUACCUCGGCGCCAUAGAUCUUGG   253 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   =****|||=||||||||||||||| targets:937   GUACCUCGGCGCCAUAGAUCUUGG   960 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |****|||=||||||||||||||| targets:1674   ACAUCUCGGCGCCAUAGAUCUUGG   1697 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |****|||=||||||||||||||| targets:1674   ACAUCUCGGCGCCAUAGAUCUUGG   1697 Target Full Sequence	1.0	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |****|||=||||||||||||||| targets:1756   ACAUCUCGGCGCCAUAGAUCUUGG   1779 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |****|||=||||||||||||||| targets:1781   ACAUCUCGGCGCCAUAGAUCUUGG   1804 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   |****|||=||||||||||||||| targets:1788   ACAUCUCGGCGCCAUAGAUCUUGG   1811 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068330.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   ***|*|||=||||||||||=|||| targets:723   CUAGCUCGGCGCCAUAGAUUUUGG   746 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=|||||*||||||||| targets:756   CGAGCUCGGCGCCACAGAUCUUGG   779 Target Full Sequence	2.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget
BT034188.1	ncRNA:24   UCCCCAGCUGCGGUAUCUAGAACC   1   *|*|*|||=|||||*||||||||| targets:756   CGAGCUCGGCGCCACAGAUCUUGG   779 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget