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BaseInfo

ncRNA ID novel_zma_miR5660
Species Zea mays
Class miRNA
Genome position Chr2:11979832-11979925 [+]
Reference genome RefGen_v4
Source SRR2638137
Length 23
Mature sequence(if miRNA) 72 - AGAAGUUCUUUGCCGAGUGUCAA - 94
Stem-loop(if miRNA) --                GC              CAACAAAAAA   C
  GGCACUCGGCAAAGAA  UCUUUGUCGAGUGU          ACU U
  ||||||||||||||||  ||||||||||||||          |||
  CUGUGAGCCGUUUCUU  AGAAACGGCUCACA          UGA C
AA                GA              --AAAGAAAA   C
Stem-loop sequence GGCACUCGGCAAAGAAGCUCUUUGUCGAGUGUCAACAAAAAAACUCUCCAGUAAAAGAAAACACUCGGCAAAGAAGUUCUUUGCCGAGUGUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001165647.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  *||=|||||||||||*|||||||
targets:126   GUGGCACUCGGCAAAUAACUUCU   148

1.5 Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA NA coding protein psRNATarget
NM_001165647.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  **||||||||||||||||*||||
targets:27   AAGACACUCGGCAAAGAAAUUCU   49

1.5 Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA NA coding protein psRNATarget
BT055423.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  *||=|||||||||||*|||||||
targets:126   GUGGCACUCGGCAAAUAACUUCU   148

1.5 Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds NA coding protein psRNATarget
BT055423.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  **||||||||||||||||*||||
targets:27   AAGACACUCGGCAAAGAAAUUCU   49

1.5 Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds NA coding protein psRNATarget
BT054268.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  *||=|||||||||||*|||||||
targets:2145   GUGGCACUCGGCAAAUAACUUCU   2167

1.5 Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds NA coding protein psRNATarget
BT054268.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  **||||||||||||||||*||||
targets:2046   AAGACACUCGGCAAAGAAAUUCU   2068

1.5 Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds NA coding protein psRNATarget
NM_001152461.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  *||=|||||||||||*|||||||
targets:2145   GUGGCACUCGGCAAAUAACUUCU   2167

1.5 Zea mays uncharacterized LOC100279456 (IDP836), mRNA NA coding protein psRNATarget
NM_001152461.1
ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1
  **||||||||||||||||*||||
targets:2046   AAGACACUCGGCAAAGAAAUUCU   2068

1.5 Zea mays uncharacterized LOC100279456 (IDP836), mRNA NA coding protein psRNATarget