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BaseInfo

ncRNA ID	novel_zma_miR5660
Species	Zea mays
Class	miRNA
Genome position	Chr2:11979832-11979925 [+]
Reference genome	RefGen_v4
Source	SRR2638137
Length	23
Mature sequence(if miRNA)	72 - AGAAGUUCUUUGCCGAGUGUCAA - 94
Stem-loop(if miRNA)	--                GC              CAACAAAAAA   C   GGCACUCGGCAAAGAA  UCUUUGUCGAGUGU          ACU U   ||||||||||||||||  ||||||||||||||          |||   CUGUGAGCCGUUUCUU  AGAAACGGCUCACA          UGA C AA                GA              --AAAGAAAA   C
Stem-loop sequence	GGCACUCGGCAAAGAAGCUCUUUGUCGAGUGUCAACAAAAAAACUCUCCAGUAAAAGAAAACACUCGGCAAAGAAGUUCUUUGCCGAGUGUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   *||=|||||||||||*||||||| targets:126   GUGGCACUCGGCAAAUAACUUCU   148 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   **||||||||||||||||*|||| targets:27   AAGACACUCGGCAAAGAAAUUCU   49 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   *||=|||||||||||*||||||| targets:126   GUGGCACUCGGCAAAUAACUUCU   148 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT055423.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   **||||||||||||||||*|||| targets:27   AAGACACUCGGCAAAGAAAUUCU   49 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   *||=|||||||||||*||||||| targets:2145   GUGGCACUCGGCAAAUAACUUCU   2167 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   **||||||||||||||||*|||| targets:2046   AAGACACUCGGCAAAGAAAUUCU   2068 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   *||=|||||||||||*||||||| targets:2145   GUGGCACUCGGCAAAUAACUUCU   2167 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   AACUGUGAGCCGUUUCUUGAAGA   1   **||||||||||||||||*|||| targets:2046   AAGACACUCGGCAAAGAAAUUCU   2068 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget