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BaseInfo

ncRNA ID novel_zma_miR5659
Species Zea mays
Class miRNA
Genome position Chr2:132222755-132222806 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647389;SRR2647390;SRR2647467;SRR1583943
Length 24
Mature sequence(if miRNA) 29 - GACUAGGAGGGGAUUUAAACCUCU - 52
Stem-loop(if miRNA) --   A                  GA
  GGG UUAAAUCCCCUCCUAGUC  A
  ||| ||||||||||||||||||
  UCC AAUUUAGGGGAGGAUCAG  A
UC   A                  UA
Stem-loop sequence GGGAUUAAAUCCCCUCCUAGUCGAAAAUGACUAGGAGGGGAUUUAAACCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU953211.1
ncRNA:24   UCUCCAAAUUUAGGGGAGGAUCAG   1
  |||||||||||||||||=|||||=
targets:1757   AGAGGUUUAAAUCCCCUUCUAGUU   1780

2.5 Zea mays clone 1390646 mRNA sequence NA coding protein psRNATarget
NM_001319738.1
ncRNA:24   UCUCCAAAUUUAGGGGAGGAUCAG   1
  |||||||||||||||||=|||||=
targets:1783   AGAGGUUUAAAUCCCCUUCUAGUU   1806

2.5 Zea mays cytochrome P450 81D11-like (LOC103640488), mRNA NA coding protein psRNATarget
EU957986.1
ncRNA:24   UCUCCAAAUUUAGGGGAGGAUCAG   1
  |||||||||||||||||=|||||=
targets:1784   AGAGGUUUAAAUCCCCUUCUAGUU   1807

2.5 Zea mays clone 1639355 cytochrome P450 CYP81N5 mRNA, complete cds NA coding protein psRNATarget
EZ095217.1
ncRNA:24   UCUCCAAAUUUAGGGGAGGAUCAG   1
  ||=|||||||||||||*|||||||
targets:73   AGGGGUUUAAAUCCCCGCCUAGUC   96

1.5 TSA: Zea mays contig30870, mRNA sequence NA coding protein psRNATarget
XM_008670947.1
ncRNA:24   UCUCCAAAUUUAGGGGAGGAUCAG   1
  ||=||*|||||||||=||||||||
targets:604   AGGGGAUUAAAUCCCUUCCUAGUC   627

2.5 PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA NA coding protein psRNATarget
XM_008656925.2
ncRNA:24   UCUCCAAAUUUAGGGGAGGAUCAG   1
  ||||*||||||||||=|||||||=
targets:79   AGAGAUUUAAAUCCCUUCCUAGUU   102

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA NA coding protein psRNATarget
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