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BaseInfo

ncRNA ID novel_zma_miR5658
Species Zea mays
Class miRNA
Genome position Chr2:109314250-109314311 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647385;SRR2647386;SRR2647388;SRR2647389;SRR2647391;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - GUUCGCUCUUCACUGGUUCGGUGA - 24
Stem-loop(if miRNA) --     C           U    GAC     G
  GUUCG UCUUCACUGGU CGGU   GCUGG G
  ||||| ||||||||||| ||||   |||||
  CAGGU AGGAGUGACCG GUUA   CGGCU A
GU     -           -    --A     C
Stem-loop sequence GUUCGCUCUUCACUGGUUCGGUGACGCUGGGGACUCGGCAAUUGGCCAGUGAGGAUGGACUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ054133.1
ncRNA:24   AG-UGGCUUGGUCACUUCUCGCUUG   1
  ||-=|=|||||*|||||||*|||||
targets:136   UCUGCUGAACCUGUGAAGAACGAAC   160

2.5 TSA: Zea mays contig55255, mRNA sequence NA coding protein psRNATarget
EU964405.1
ncRNA:24   AG-UGGCUUGGUCACUUCUCGCUUG   1
  ||-=|=|||||*|||||||*|||||
targets:554   UCUGCUGAACCUGUGAAGAACGAAC   578

2.5 Zea mays clone 278645 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU973679.1
ncRNA:24   AG-UGGCUUGGUCACUUCUCGCUUG   1
  ||-=|=|||||*|||||||*|||||
targets:601   UCUGCUGAACCUGUGAAGAACGAAC   625

2.5 Zea mays clone 404386 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001196884.1
ncRNA:24   AG-UGGCUUGGUCACUUCUCGCUUG   1
  ||-=|=|||||*|||||||*|||||
targets:573   UCUGCUGAACCUGUGAAGAACGAAC   597

2.5 Zea mays hypothetical protein (LOC100278464), mRNA NA coding protein psRNATarget
BT088025.1
ncRNA:24   AG-UGGCUUGGUCACUUCUCGCUUG   1
  ||-=|=|||||*|||||||*|||||
targets:573   UCUGCUGAACCUGUGAAGAACGAAC   597

2.5 Zea mays full-length cDNA clone ZM_BFb0366F23 mRNA, complete cds NA coding protein psRNATarget