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BaseInfo

ncRNA ID novel_zma_miR5657
Species Zea mays
Class miRNA
Genome position Chr2:70451549-70451759 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647390;SRR2647467
Length 22
Mature sequence(if miRNA) 1 - UUGAUUUCACAACCUCUUGAUG - 22
Stem-loop(if miRNA) --           A   C    U     AA   A       G       G                     A           C       C      UUCAAUU
  UUGAUUUCACA CCU UUGA GCAAU  CUC CCAAGUU GUAAGGU UUGGAGGCUUAUACCCUGAAU AAAUUGUGUUG GGCCUCA UUGCGG       G
  ||||||||||| ||| |||| |||||  ||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||       U
  AACUAAAGUGU GGA AACU CGUUA  GAG GGUUCAA CAUUCCA AACCUCCGAAUAUGGGACUUG UUUAACACAAC CUGGAGU AACGUC       G
AC           C   A    U     CC   C       G       A                     G           A       U      CCAUAUU
Stem-loop sequence UUGAUUUCACAACCUCUUGAUGCAAUAACUCACCAAGUUGGUAAGGUGUUGGAGGCUUAUACCCUGAAUAAAAUUGUGUUGCGGCCUCACUUGCGGUUCAAUUGUGUUAUACCCUGCAAUUGAGGUCACAACACAAUUUGGUUCAGGGUAUAAGCCUCCAAAACCUUACGAACUUGGCGAGCCAUUGCUUCAAAAGGCUGUGAAAUCAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020553167.1
ncRNA:22   GUAGUUCUCCAACACUUUAGUU   1
  **||=|||||*|||||||||||
targets:1093   GCUCGAGAGGAUGUGAAAUCAA   1114

2.5 PREDICTED: Zea mays uncharacterized LOC100273763 (pco133309c), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008683256.2
ncRNA:22   GUAGUUCUCCAACACUUUAGUU   1
  **||=|||||*|||||||||||
targets:1093   GCUCGAGAGGAUGUGAAAUCAA   1114

2.5 PREDICTED: Zea mays uncharacterized LOC100273763 (pco133309c), transcript variant X1, mRNA NA coding protein psRNATarget