ncRNA ID | novel_zma_miR5657 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:70451549-70451759 [+] |
Reference genome | RefGen_v4 |
Source | SRR2638137;SRR2647390;SRR2647467 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUGAUUUCACAACCUCUUGAUG - 22 |
Stem-loop(if miRNA) |
--           A   C    U     AA   A       G       G                     A           C       C      UUCAAUU   UUGAUUUCACA CCU UUGA GCAAU  CUC CCAAGUU GUAAGGU UUGGAGGCUUAUACCCUGAAU AAAUUGUGUUG GGCCUCA UUGCGG       G   ||||||||||| ||| |||| |||||  ||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||       U   AACUAAAGUGU GGA AACU CGUUA  GAG GGUUCAA CAUUCCA AACCUCCGAAUAUGGGACUUG UUUAACACAAC CUGGAGU AACGUC       G AC           C   A    U     CC   C       G       A                     G           A       U      CCAUAUU |
Stem-loop sequence | UUGAUUUCACAACCUCUUGAUGCAAUAACUCACCAAGUUGGUAAGGUGUUGGAGGCUUAUACCCUGAAUAAAAUUGUGUUGCGGCCUCACUUGCGGUUCAAUUGUGUUAUACCCUGCAAUUGAGGUCACAACACAAUUUGGUUCAGGGUAUAAGCCUCCAAAACCUUACGAACUUGGCGAGCCAUUGCUUCAAAAGGCUGUGAAAUCAACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020553167.1 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC100273763 (pco133309c), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008683256.2 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC100273763 (pco133309c), transcript variant X1, mRNA | NA | coding protein | psRNATarget |