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BaseInfo

ncRNA ID novel_zma_miR5655
Species Zea mays
Class miRNA
Genome position Chr2:2555448-2555653 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - GAUGAUUUAAUAUGUGUACCAUGU - 24
Stem-loop(if miRNA) AUC                                  A       A             GU        A    U    C U  AACCACAACACUUCACCA
   UGGUGCACAUAUUAAAUUAUCGCCGUUCAUCUCA AUCUAAC UCUCUGGUUGCUU  UAUAUUUU CAAA AACA C UC                  C
   |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||| |||| |||| | ||
   ACCAUGUGUAUAAUUUAGUAGUGGCAGGUAGAGU UAGAUUG AGAGAUCAACGAG  AUAUAAAA GUUU UUGU G AG                  U
UGU                                  C       C             AC        C    C    A U  ACUUAAGACUUCACCACU
Stem-loop sequence AUCUGGUGCACAUAUUAAAUUAUCGCCGUUCAUCUCAAAUCUAACAUCUCUGGUUGCUUGUUAUAUUUUACAAAUAACACCUUCAACCACAACACUUCACCACUUCACCACUUCAGAAUUCAGAUGAUGUUCUUUGCAAAAUAUACAGAGCAACUAGAGACGUUAGAUCUGAGAUGGACGGUGAUGAUUUAAUAUGUGUACCAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664116.2
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||||||||||||||
targets:653   ACAUGGUGCACAUAUUAAAUCAUC   676

1.0 PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001158187.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||||||||||||||
targets:733   ACAUGGUGCACAUAUUAAAUCAUC   756

1.0 Zea mays DNA-binding WRKY (LOC100285294), mRNA NA coding protein psRNATarget
EU971585.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||||||||||||||
targets:733   ACAUGGUGCACAUAUUAAAUCAUC   756

1.0 Zea mays clone 367572 DNA-binding WRKY mRNA, complete cds NA coding protein psRNATarget
EU950091.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||||||||||||||
targets:431   ACAUGGUGCACAUAUUAAAUCAUC   454

1.0 Zea mays clone 460911 mRNA sequence NA coding protein psRNATarget
EU950356.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||||||||||||||
targets:432   ACAUGGUGCACAUAUUAAAUCAUC   455

1.0 Zea mays clone 490104 mRNA sequence NA coding protein psRNATarget
XM_020548525.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |=|||||=||||||||||||||||
targets:9   AUAUGGUGCACAUAUUAAAUCAUC   32

1.0 PREDICTED: Zea mays uncharacterized LOC109944060 (LOC109944060), mRNA NA coding protein psRNATarget
BT061436.2
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |=|||||=||||||||||||||||
targets:149   AUAUGGUGCACAUAUUAAAUCAUC   172

1.0 Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds NA coding protein psRNATarget
BT087210.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||=|||||||||||||
targets:315   ACAUGGUGCAUAUAUUAAAUCAUC   338

2.0 Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds NA coding protein psRNATarget
HI405990.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |=|||||=||||||||||||||||
targets:7   AUAUGGUGCACAUAUUAAAUCAUC   30

1.0 Sequence 4115 from Patent EP2074227 NA coding protein psRNATarget
JB166451.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |=|||||=||||||||||||||||
targets:7   AUAUGGUGCACAUAUUAAAUCAUC   30

1.0 Sequence 4115 from Patent EP2559767 NA coding protein psRNATarget
LQ238120.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |=|||||=||||||||||||||||
targets:7   AUAUGGUGCACAUAUUAAAUCAUC   30

1.0 Sequence 4115 from Patent EP2985353 NA coding protein psRNATarget
LQ235548.1
ncRNA:23   GUACCAUGUGUAUAAUUUAGUAG   1
  ||||||=||||||||||||||||
targets:1   CAUGGUGCACAUAUUAAAUCAUC   23

1.0 Sequence 1543 from Patent EP2985353 NA coding protein psRNATarget
HI403418.1
ncRNA:23   GUACCAUGUGUAUAAUUUAGUAG   1
  ||||||=||||||||||||||||
targets:1   CAUGGUGCACAUAUUAAAUCAUC   23

1.0 Sequence 1543 from Patent EP2074227 NA coding protein psRNATarget
JB163879.1
ncRNA:23   GUACCAUGUGUAUAAUUUAGUAG   1
  ||||||=||||||||||||||||
targets:1   CAUGGUGCACAUAUUAAAUCAUC   23

1.0 Sequence 1543 from Patent EP2559767 NA coding protein psRNATarget
EU964085.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |=|||||=||||||||||||=|||
targets:1389   AUAUGGUGCACAUAUUAAAUUAUC   1412

2.5 Zea mays clone 275778 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020537789.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||*|||||||||||
targets:33   ACAUGGUGCACACAUUAAAUCAUC   56

2.5 PREDICTED: Zea mays Glycine-rich RNA-binding protein RZ1C (pco145034), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646350.2
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||||=||||||||||||||*|
targets:1584   ACAUGGUGCACAUAUUAAAUCACC   1607

2.5 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA NA coding protein psRNATarget
JB163459.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||*|=||||||||||||||||
targets:41   ACAUGAUGCACAUAUUAAAUCAUC   64

2.0 Sequence 1123 from Patent EP2559767 NA coding protein psRNATarget
LQ235128.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||*|=||||||||||||||||
targets:41   ACAUGAUGCACAUAUUAAAUCAUC   64

2.0 Sequence 1123 from Patent EP2985353 NA coding protein psRNATarget
HI402998.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  |||||*|=||||||||||||||||
targets:41   ACAUGAUGCACAUAUUAAAUCAUC   64

2.0 Sequence 1123 from Patent EP2074227 NA coding protein psRNATarget
XM_008681116.2
ncRNA:24   UGUA----CCAU-GUGUAUAAUUUAGUAG   1
  ||||----|||=-||||||||||||||||
targets:3108   ACAUAUCUGGUGUCACAUAUUAAAUCAUC   3136

3.0 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552764.1
ncRNA:24   UGUA----CCAU-GUGUAUAAUUUAGUAG   1
  ||||----|||=-||||||||||||||||
targets:2930   ACAUAUCUGGUGUCACAUAUUAAAUCAUC   2958

3.0 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA NA coding protein psRNATarget
EU948462.1
ncRNA:24   UGUACCAUGUGUAUAAUUUAGUAG   1
  *|||**|=||=|||||||||||||
targets:412   MCAUUAUGCAUAUAUUAAAUCAUC   435

3.0 Zea mays clone 377988 mRNA sequence NA coding protein psRNATarget
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