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BaseInfo

ncRNA ID novel_zma_miR5653
Species Zea mays
Class miRNA
Genome position Chr5:223794343-223794432 [+]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 67 - AACACUCGGUAAAGAAUUUGGCAC - 90
Stem-loop(if miRNA) --   ---      U      G       G  U              A
  GUU   UUCUUU ACUGAG GUUUUUU UG GGCACUCGGCAAAG G
  |||   |||||| |||||| ||||||| || ||||||||||||||
  CGG   AAGAAA UGGCUC CAAAAAA GC CCGUGAGCUGUUUC C
CA   UUU      -      A       -  -              U
Stem-loop sequence GUUUUCUUUUACUGAGGGUUUUUUGUGUGGCACUCGGCAAAGAGCUCUUUGUCGAGUGCCCGAAAAAACACUCGGUAAAGAAUUUGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008671632.2
ncRNA:24   CACGGUUUAAGAAAUGGCUCACAA   1
  **||||||||*|||||||||||||
targets:734   CAGCCAAAUUAUUUACCGAGUGUU   757

1.0 PREDICTED: Zea mays E3 ubiquitin-protein ligase RNF181 homolog (LOC103647067), mRNA NA coding protein psRNATarget