ncRNA ID | novel_zma_miR5652 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:4148168-4148287 [+] |
Reference genome | RefGen_v4 |
Source | SRR2638137 |
Length | 25 |
Mature sequence(if miRNA) | 96 - UCCAAUACUCUUGUUUCCAAACAUG - 120 |
Stem-loop(if miRNA) |
--          A             A    CCAAA                C    CAA   UGUUUGGAAG AAGAGUAUUGGAG GGAU     GGGUUAUAAUCUCUUG UAUU   A   |||||||||| ||||||||||||| ||||     |||||||||||||||| ||||   ACAAACCUUU UUCUCAUAACCUC CCUA     CCCGAUAUUAGGGAAC AUAA   A GU          G             C    ACUCC                A    AUU |
Stem-loop sequence | UGUUUGGAAGAAAGAGUAUUGGAGAGGAUCCAAAGGGUUAUAAUCUCUUGCUAUUCAAAAUUAAAUAACAAGGGAUUAUAGCCCCCUCAAUCCCCUCCAAUACUCUUGUUUCCAAACAUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EU958579.1 |
|
2.5 | Zea mays clone 1703813 hypothetical protein mRNA, complete cds | NA | coding protein | psRNATarget | |||||||||
EZ113654.1 |
|
2.5 | TSA: Zea mays contig49315, mRNA sequence | NA | coding protein | psRNATarget |