Search result

BaseInfo

ncRNA ID novel_zma_miR5652
Species Zea mays
Class miRNA
Genome position Chr2:4148168-4148287 [+]
Reference genome RefGen_v4
Source SRR2638137
Length 25
Mature sequence(if miRNA) 96 - UCCAAUACUCUUGUUUCCAAACAUG - 120
Stem-loop(if miRNA) --          A             A    CCAAA                C    CAA
  UGUUUGGAAG AAGAGUAUUGGAG GGAU     GGGUUAUAAUCUCUUG UAUU   A
  |||||||||| ||||||||||||| ||||     |||||||||||||||| ||||
  ACAAACCUUU UUCUCAUAACCUC CCUA     CCCGAUAUUAGGGAAC AUAA   A
GU          G             C    ACUCC                A    AUU
Stem-loop sequence UGUUUGGAAGAAAGAGUAUUGGAGAGGAUCCAAAGGGUUAUAAUCUCUUGCUAUUCAAAAUUAAAUAACAAGGGAUUAUAGCCCCCUCAAUCCCCUCCAAUACUCUUGUUUCCAAACAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU958579.1
ncRNA:25   GUACAAACCUUUGUUCUCAUAACCU   1
  |*|||||||||=*||||||||||||
targets:19   CUUGUUUGGAAGAAAGAGUAUUGGA   43

2.5 Zea mays clone 1703813 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ113654.1
ncRNA:25   GUACAAACCUUUGUUCUCAUAACCU   1
  |||*|*||*|||||||||||*||||
targets:199   CAUAUGUGAAAACAAGAGUAGUGGA   223

2.5 TSA: Zea mays contig49315, mRNA sequence NA coding protein psRNATarget