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BaseInfo

ncRNA ID novel_zma_miR5651
Species Zea mays
Class miRNA
Genome position Chr2:12880805-12880874 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647391
Length 22
Mature sequence(if miRNA) 49 - GUCAUCUCUUCUCUUUGGGCGG - 70
Stem-loop(if miRNA) --  -    U  UC        C  -GC   UACAU
  GU CAUC CU  UCUUUGGG GG   UUA     A
  || |||| ||  |||||||| ||   |||     C
  CA GUAG GA  AGAAACCC CU   AAU     C
CA  C    -  UC        U  AAC   UACAU
Stem-loop sequence GUCAUCUCUUCUCUUUGGGCGGGCUUAUACAUACCUACAUUAACAAUCUCCCAAAGACUAGGAUGCACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU967183.1
ncRNA:22   GG-CGGGUUUCUCUUCUCUACUG   1
  ||-||||||=|||||||||||||
targets:216   CCAGCCCAAGGAGAAGAGAUGAC   238

1.0 Zea mays clone 300073 mRNA sequence NA coding protein psRNATarget
EU964890.1
ncRNA:22   GG-CGGGUUUCUCUUCUCUACUG   1
  ||-||||||=|||||||||||||
targets:244   CCAGCCCAAGGAGAAGAGAUGAC   266

1.0 Zea mays clone 282386 somatic embryogenesis related protein mRNA, complete cds NA coding protein psRNATarget
NM_001156382.1
ncRNA:22   GG-CGGGUUUCUCUUCUCUACUG   1
  ||-||||||=|||||||||||||
targets:244   CCAGCCCAAGGAGAAGAGAUGAC   266

1.0 Zea mays somatic embryogenesis related protein (LOC100283482), mRNA NA coding protein psRNATarget
BT055411.1
ncRNA:22   GGCGGGUUUCUCUUCUCUACUG   1
  =*||||||=|||||||||||||
targets:223   UAGCCCAAGGAGAAGAGAUGAC   244

1.0 Zea mays full-length cDNA clone ZM_BFb0151B14 mRNA, complete cds NA coding protein psRNATarget
EZ051338.1
ncRNA:22   GGCGGGUUUCUCUUCUCUACUG   1
  |**||||||||||*|||||||=
targets:110   CAUCCCAAAGAGAUGAGAUGAU   131

2.5 TSA: Zea mays contig52458, mRNA sequence NA coding protein psRNATarget
EU965343.1
ncRNA:22   GGCGGGUUUCUCUUCUCUACUG   1
  |**||||||||||*|||||||=
targets:1302   CAUCCCAAAGAGAUGAGAUGAU   1323

2.5 Zea mays clone 285434 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds NA coding protein psRNATarget
NM_001156529.1
ncRNA:22   GGCGGGUUUCUCUUCUCUACUG   1
  |**||||||||||*|||||||=
targets:1302   CAUCCCAAAGAGAUGAGAUGAU   1323

2.5 Zea mays myb-like DNA-binding domain, SHAQKYF class family protein (LOC100283628), mRNA NA coding protein psRNATarget
BT016414.1
ncRNA:22   GGCGGGUUUCUCUUCUCUACUG   1
  |**||||||||||*|||||||=
targets:1288   CAUCCCAAAGAGAUGAGAUGAU   1309

2.5 Zea mays clone Contig247 mRNA sequence NA coding protein psRNATarget