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BaseInfo

ncRNA ID novel_zma_miR5649
Species Zea mays
Class miRNA
Genome position Chr2:15103132-15103192 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647389;SRR2647391;SRR2647467;SRR1583942
Length 24
Mature sequence(if miRNA) 38 - GAGCUAAACGAGCCAACUCGAGUU - 61
Stem-loop(if miRNA) --        C  G         G   U AA
  GAGCUAAA GA CCAACUCGA UUG C  A
  |||||||| || ||||||||| ||| |
  CUCGAUUU CU GGUUGAGCU AAC G  C
UG        -  A         G   U AG
Stem-loop sequence GAGCUAAACGAGCCAACUCGAGUUGUCAAACGAGUCAAGUCGAGUUGGAUCUUUAGCUCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950141.1
ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1
  |=||||||*|||||||||||||||
targets:321   AGCUCGAGCUGGCUCGUUUAGCUC   344

1.0 Zea mays clone 462989 mRNA sequence NA coding protein psRNATarget
XM_008663462.2
ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1
  |=||||||*|||||=|||||||||
targets:1759   AGCUCGAGGUGGCUUGUUUAGCUC   1782

2.5 PREDICTED: Zea mays hypothetical protein (LOC100274870), transcript variant X3, mRNA NA coding protein psRNATarget
JB166650.1
ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1
  |=||=|||||**||||||||||||
targets:49   AGCUUGAGUUAACUCGUUUAGCUC   72

2.5 Sequence 4314 from Patent EP2559767 NA coding protein psRNATarget
LQ238319.1
ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1
  |=||=|||||**||||||||||||
targets:49   AGCUUGAGUUAACUCGUUUAGCUC   72

2.5 Sequence 4314 from Patent EP2985353 NA coding protein psRNATarget
HI406189.1
ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1
  |=||=|||||**||||||||||||
targets:49   AGCUUGAGUUAACUCGUUUAGCUC   72

2.5 Sequence 4314 from Patent EP2074227 NA coding protein psRNATarget