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BaseInfo

ncRNA ID	novel_zma_miR5649
Species	Zea mays
Class	miRNA
Genome position	Chr2:15103132-15103192 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647343;SRR2647389;SRR2647391;SRR2647467;SRR1583942
Length	24
Mature sequence(if miRNA)	38 - GAGCUAAACGAGCCAACUCGAGUU - 61
Stem-loop(if miRNA)	--        C  G         G   U AA   GAGCUAAA GA CCAACUCGA UUG C  A   |||||||| || ||||||||| ||| |   CUCGAUUU CU GGUUGAGCU AAC G  C UG        -  A         G   U AG
Stem-loop sequence	GAGCUAAACGAGCCAACUCGAGUUGUCAAACGAGUCAAGUCGAGUUGGAUCUUUAGCUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU950141.1	ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1   |=||||||*||||||||||||||| targets:321   AGCUCGAGCUGGCUCGUUUAGCUC   344 Target Full Sequence	1.0	Zea mays clone 462989 mRNA sequence	NA	coding protein	psRNATarget
XM_008663462.2	ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1   |=||||||*|||||=||||||||| targets:1759   AGCUCGAGGUGGCUUGUUUAGCUC   1782 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100274870), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB166650.1	ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1   |=||=|||||**|||||||||||| targets:49   AGCUUGAGUUAACUCGUUUAGCUC   72 Target Full Sequence	2.5	Sequence 4314 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238319.1	ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1   |=||=|||||**|||||||||||| targets:49   AGCUUGAGUUAACUCGUUUAGCUC   72 Target Full Sequence	2.5	Sequence 4314 from Patent EP2985353	NA	coding protein	psRNATarget
HI406189.1	ncRNA:24   UUGAGCUCAACCGAGCAAAUCGAG   1   |=||=|||||**|||||||||||| targets:49   AGCUUGAGUUAACUCGUUUAGCUC   72 Target Full Sequence	2.5	Sequence 4314 from Patent EP2074227	NA	coding protein	psRNATarget