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BaseInfo

ncRNA ID novel_zma_miR5648
Species Zea mays
Class miRNA
Genome position Chr2:20729544-20729634 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - AAUUUAUACACUAAAAUGGAAUAA - 24
Stem-loop(if miRNA) --             UUCA     A C                 C
  AUUCCAUUUUAGU    AAAUU C AAAUAUAGAAACUAAAA U
  |||||||||||||    ||||| | ||||||||||||||||| U
  UAAGGUAAAAUCA    UUUAA G UUUAUAUCUUUGAUUUU U
AA             CAUA     C A                 A
Stem-loop sequence AUUCCAUUUUAGUUUCAAAAUUACCAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUACACUAAAAUGGAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403053.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||||||||||||||||||||
targets:42   UUAUUCCAUUUUAGUGUAUAAAUU   65

0.0 Sequence 1178 from Patent EP2074227 NA coding protein psRNATarget
LQ235183.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||||||||||||||||||||
targets:42   UUAUUCCAUUUUAGUGUAUAAAUU   65

0.0 Sequence 1178 from Patent EP2985353 NA coding protein psRNATarget
JB163514.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||||||||||||||||||||
targets:42   UUAUUCCAUUUUAGUGUAUAAAUU   65

0.0 Sequence 1178 from Patent EP2559767 NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=|||||||||||||||||
targets:1580   UUAUUCUAUUUUAGUGUAUAAAUU   1603

1.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
HI403040.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=|||||||||||||||||
targets:43   UUAUUCUAUUUUAGUGUAUAAAUU   66

1.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
JB163501.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=|||||||||||||||||
targets:43   UUAUUCUAUUUUAGUGUAUAAAUU   66

1.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
LQ235170.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=|||||||||||||||||
targets:43   UUAUUCUAUUUUAGUGUAUAAAUU   66

1.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
EU956227.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*||||||||||||||||
targets:1281   UUAUUCCUUUUUAGUGUAUAAAUU   1304

1.0 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
HI407221.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*||||||||||||||||
targets:21   UUAUUCCUUUUUAGUGUAUAAAUU   44

1.0 Sequence 5346 from Patent EP2074227 NA coding protein psRNATarget
JB167682.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*||||||||||||||||
targets:21   UUAUUCCUUUUUAGUGUAUAAAUU   44

1.0 Sequence 5346 from Patent EP2559767 NA coding protein psRNATarget
LQ239351.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*||||||||||||||||
targets:21   UUAUUCCUUUUUAGUGUAUAAAUU   44

1.0 Sequence 5346 from Patent EP2985353 NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=||||||||*||||||||
targets:850   UUAUUCUAUUUUAGUCUAUAAAUU   873

2.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
HI403055.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=||||||||*||||||||
targets:41   UUAUUCUAUUUUAGUAUAUAAAUU   64

2.5 Sequence 1180 from Patent EP2074227 NA coding protein psRNATarget
LQ235171.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||||||||||||*||||||||
targets:41   UUGUUCCAUUUUAGUAUAUAAAUU   64

1.5 Sequence 1166 from Patent EP2985353 NA coding protein psRNATarget
JB163516.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=||||||||*||||||||
targets:41   UUAUUCUAUUUUAGUAUAUAAAUU   64

2.5 Sequence 1180 from Patent EP2559767 NA coding protein psRNATarget
LQ235185.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||=||||||||*||||||||
targets:41   UUAUUCUAUUUUAGUAUAUAAAUU   64

2.5 Sequence 1180 from Patent EP2985353 NA coding protein psRNATarget
JB163502.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||||||||||||*||||||||
targets:41   UUGUUCCAUUUUAGUAUAUAAAUU   64

1.5 Sequence 1166 from Patent EP2559767 NA coding protein psRNATarget
HI403041.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||||||||||||*||||||||
targets:41   UUGUUCCAUUUUAGUAUAUAAAUU   64

1.5 Sequence 1166 from Patent EP2074227 NA coding protein psRNATarget
HI410280.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||||||||||||*||||||||
targets:17   UUGUUCCAUUUUAGUAUAUAAAUU   40

1.5 Sequence 8405 from Patent EP2074227 NA coding protein psRNATarget
JB170741.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||||||||||||*||||||||
targets:17   UUGUUCCAUUUUAGUAUAUAAAUU   40

1.5 Sequence 8405 from Patent EP2559767 NA coding protein psRNATarget
LQ242410.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||||||||||||*||||||||
targets:17   UUGUUCCAUUUUAGUAUAUAAAUU   40

1.5 Sequence 8405 from Patent EP2985353 NA coding protein psRNATarget
HI403342.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||=|||||||||*||||||||
targets:7   UUAUUUCAUUUUAGUUUAUAAAUU   30

2.5 Sequence 1467 from Patent EP2074227 NA coding protein psRNATarget
JB163803.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||=|||||||||*||||||||
targets:7   UUAUUUCAUUUUAGUUUAUAAAUU   30

2.5 Sequence 1467 from Patent EP2559767 NA coding protein psRNATarget
LQ235472.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||=|||||||||*||||||||
targets:7   UUAUUUCAUUUUAGUUUAUAAAUU   30

2.5 Sequence 1467 from Patent EP2985353 NA coding protein psRNATarget
BT053999.2
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||=|||||||||*||||||||
targets:1973   UUGUUUCAUUUUAGUAUAUAAAUU   1996

2.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||=|||||||||*||||||||
targets:1973   UUGUUUCAUUUUAGUAUAUAAAUU   1996

2.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||=||=|||||||||*||||||||
targets:803   UUGUUUCAUUUUAGUAUAUAAAUU   826

2.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
BT083492.2
ncRNA:24   AA-UAAGGUAAAAUCACAUAUUUAA   1
  ||-|||||*||||||||||||||||
targets:687   UUCAUUCCUUUUUAGUGUAUAAAUU   711

1.0 Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||||*||||||*||||||||
targets:3001   UUAUUCCACUUUAGUCUAUAAAUU   3024

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||||*||||||*||||||||
targets:2612   UUAUUCCACUUUAGUCUAUAAAUU   2635

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
EU965238.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||**||||||||||||||||
targets:1203   UUAUUCAUUUUUAGUGUAUAAAUU   1226

2.0 Zea mays clone 284715 protein COQ10 A mRNA, complete cds NA coding protein psRNATarget
NM_001156492.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||**||||||||||||||||
targets:1203   UUAUUCAUUUUUAGUGUAUAAAUU   1226

2.0 Zea mays protein COQ10 A (LOC100283591), mRNA NA coding protein psRNATarget
EU942443.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*|||||||*||||||||
targets:504   UUAUUCCUUUUUAGUCUAUAAAUU   527

2.5 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
HI403061.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*|||||||*||||||||
targets:41   UUAUUCCUUUUUAGUAUAUAAAUU   64

2.5 Sequence 1186 from Patent EP2074227 NA coding protein psRNATarget
JB163522.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*|||||||*||||||||
targets:41   UUAUUCCUUUUUAGUAUAUAAAUU   64

2.5 Sequence 1186 from Patent EP2559767 NA coding protein psRNATarget
LQ235191.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  |||||||*|||||||*||||||||
targets:41   UUAUUCCUUUUUAGUAUAUAAAUU   64

2.5 Sequence 1186 from Patent EP2985353 NA coding protein psRNATarget
JB167801.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||**||||||||||||||||
targets:21   UUAUUCAUUUUUAGUGUAUAAAUU   44

2.0 Sequence 5465 from Patent EP2559767 NA coding protein psRNATarget
LQ239470.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||**||||||||||||||||
targets:21   UUAUUCAUUUUUAGUGUAUAAAUU   44

2.0 Sequence 5465 from Patent EP2985353 NA coding protein psRNATarget
HI407340.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||||||**||||||||||||||||
targets:21   UUAUUCAUUUUUAGUGUAUAAAUU   44

2.0 Sequence 5465 from Patent EP2074227 NA coding protein psRNATarget
LQ235530.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||*||||||||||||*||||||||
targets:7   UUUUUCCAUUUUAGUUUAUAAAUU   30

1.5 Sequence 1525 from Patent EP2985353 NA coding protein psRNATarget
HI403400.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||*||||||||||||*||||||||
targets:7   UUUUUCCAUUUUAGUUUAUAAAUU   30

1.5 Sequence 1525 from Patent EP2074227 NA coding protein psRNATarget
JB163861.1
ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1
  ||*||||||||||||*||||||||
targets:7   UUUUUCCAUUUUAGUUUAUAAAUU   30

1.5 Sequence 1525 from Patent EP2559767 NA coding protein psRNATarget
NM_001175546.1
ncRNA:24   AAU----AAGGUAAAAUCACAUAUUUAA   1
  |||----|||=||||||||*||||||||
targets:1560   UUAGUCUUUCUAUUUUAGUUUAUAAAUU   1587

2.5 Zea mays uncharacterized LOC100382850 (LOC100382850), mRNA NA coding protein psRNATarget
BT065541.1
ncRNA:24   AAU----AAGGUAAAAUCACAUAUUUAA   1
  |||----|||=||||||||*||||||||
targets:1560   UUAGUCUUUCUAUUUUAGUUUAUAAAUU   1587

2.5 Zea mays full-length cDNA clone ZM_BFb0228I08 mRNA, complete cds NA coding protein psRNATarget
EU948916.1
ncRNA:24   AAU----AAGGUAAAAUCACAUAUUUAA   1
  |||----|||=||||||||*||||||||
targets:434   UUAGUCUUUCUAUUUUAGUUUAUAAAUU   461

2.5 Zea mays clone 389794 mRNA sequence NA coding protein psRNATarget