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BaseInfo

ncRNA ID	novel_zma_miR5648
Species	Zea mays
Class	miRNA
Genome position	Chr2:20729544-20729634 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	1 - AAUUUAUACACUAAAAUGGAAUAA - 24
Stem-loop(if miRNA)	--             UUCA     A C                 C   AUUCCAUUUUAGU    AAAUU C AAAUAUAGAAACUAAAA U   |||||||||||||    ||||| | ||||||||||||||||| U   UAAGGUAAAAUCA    UUUAA G UUUAUAUCUUUGAUUUU U AA             CAUA     C A                 A
Stem-loop sequence	AUUCCAUUUUAGUUUCAAAAUUACCAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUACACUAAAAUGGAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403053.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||||||||||||||||||| targets:42   UUAUUCCAUUUUAGUGUAUAAAUU   65 Target Full Sequence	0.0	Sequence 1178 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235183.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||||||||||||||||||| targets:42   UUAUUCCAUUUUAGUGUAUAAAUU   65 Target Full Sequence	0.0	Sequence 1178 from Patent EP2985353	NA	coding protein	psRNATarget
JB163514.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||||||||||||||||||| targets:42   UUAUUCCAUUUUAGUGUAUAAAUU   65 Target Full Sequence	0.0	Sequence 1178 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||||||||||| targets:1580   UUAUUCUAUUUUAGUGUAUAAAUU   1603 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||||||||||| targets:43   UUAUUCUAUUUUAGUGUAUAAAUU   66 Target Full Sequence	1.0	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||||||||||| targets:43   UUAUUCUAUUUUAGUGUAUAAAUU   66 Target Full Sequence	1.0	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||||||||||| targets:43   UUAUUCUAUUUUAGUGUAUAAAUU   66 Target Full Sequence	1.0	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||||||||||| targets:1281   UUAUUCCUUUUUAGUGUAUAAAUU   1304 Target Full Sequence	1.0	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
HI407221.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||||||||||| targets:21   UUAUUCCUUUUUAGUGUAUAAAUU   44 Target Full Sequence	1.0	Sequence 5346 from Patent EP2074227	NA	coding protein	psRNATarget
JB167682.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||||||||||| targets:21   UUAUUCCUUUUUAGUGUAUAAAUU   44 Target Full Sequence	1.0	Sequence 5346 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239351.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||||||||||| targets:21   UUAUUCCUUUUUAGUGUAUAAAUU   44 Target Full Sequence	1.0	Sequence 5346 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||*|||||||| targets:850   UUAUUCUAUUUUAGUCUAUAAAUU   873 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||*|||||||| targets:41   UUAUUCUAUUUUAGUAUAUAAAUU   64 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||||||||||||*|||||||| targets:41   UUGUUCCAUUUUAGUAUAUAAAUU   64 Target Full Sequence	1.5	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||*|||||||| targets:41   UUAUUCUAUUUUAGUAUAUAAAUU   64 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||=||||||||*|||||||| targets:41   UUAUUCUAUUUUAGUAUAUAAAUU   64 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
JB163502.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||||||||||||*|||||||| targets:41   UUGUUCCAUUUUAGUAUAUAAAUU   64 Target Full Sequence	1.5	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||||||||||||*|||||||| targets:41   UUGUUCCAUUUUAGUAUAUAAAUU   64 Target Full Sequence	1.5	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
HI410280.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||||||||||||*|||||||| targets:17   UUGUUCCAUUUUAGUAUAUAAAUU   40 Target Full Sequence	1.5	Sequence 8405 from Patent EP2074227	NA	coding protein	psRNATarget
JB170741.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||||||||||||*|||||||| targets:17   UUGUUCCAUUUUAGUAUAUAAAUU   40 Target Full Sequence	1.5	Sequence 8405 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242410.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||||||||||||*|||||||| targets:17   UUGUUCCAUUUUAGUAUAUAAAUU   40 Target Full Sequence	1.5	Sequence 8405 from Patent EP2985353	NA	coding protein	psRNATarget
HI403342.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||=|||||||||*|||||||| targets:7   UUAUUUCAUUUUAGUUUAUAAAUU   30 Target Full Sequence	2.5	Sequence 1467 from Patent EP2074227	NA	coding protein	psRNATarget
JB163803.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||=|||||||||*|||||||| targets:7   UUAUUUCAUUUUAGUUUAUAAAUU   30 Target Full Sequence	2.5	Sequence 1467 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235472.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||=|||||||||*|||||||| targets:7   UUAUUUCAUUUUAGUUUAUAAAUU   30 Target Full Sequence	2.5	Sequence 1467 from Patent EP2985353	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||=|||||||||*|||||||| targets:1973   UUGUUUCAUUUUAGUAUAUAAAUU   1996 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||=|||||||||*|||||||| targets:1973   UUGUUUCAUUUUAGUAUAUAAAUU   1996 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||=||=|||||||||*|||||||| targets:803   UUGUUUCAUUUUAGUAUAUAAAUU   826 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   AA-UAAGGUAAAAUCACAUAUUUAA   1   ||-|||||*|||||||||||||||| targets:687   UUCAUUCCUUUUUAGUGUAUAAAUU   711 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||||*||||||*|||||||| targets:3001   UUAUUCCACUUUAGUCUAUAAAUU   3024 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||||*||||||*|||||||| targets:2612   UUAUUCCACUUUAGUCUAUAAAUU   2635 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||**|||||||||||||||| targets:1203   UUAUUCAUUUUUAGUGUAUAAAUU   1226 Target Full Sequence	2.0	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||**|||||||||||||||| targets:1203   UUAUUCAUUUUUAGUGUAUAAAUU   1226 Target Full Sequence	2.0	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||*|||||||| targets:504   UUAUUCCUUUUUAGUCUAUAAAUU   527 Target Full Sequence	2.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
HI403061.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||*|||||||| targets:41   UUAUUCCUUUUUAGUAUAUAAAUU   64 Target Full Sequence	2.5	Sequence 1186 from Patent EP2074227	NA	coding protein	psRNATarget
JB163522.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||*|||||||| targets:41   UUAUUCCUUUUUAGUAUAUAAAUU   64 Target Full Sequence	2.5	Sequence 1186 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235191.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   |||||||*|||||||*|||||||| targets:41   UUAUUCCUUUUUAGUAUAUAAAUU   64 Target Full Sequence	2.5	Sequence 1186 from Patent EP2985353	NA	coding protein	psRNATarget
JB167801.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||**|||||||||||||||| targets:21   UUAUUCAUUUUUAGUGUAUAAAUU   44 Target Full Sequence	2.0	Sequence 5465 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239470.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||**|||||||||||||||| targets:21   UUAUUCAUUUUUAGUGUAUAAAUU   44 Target Full Sequence	2.0	Sequence 5465 from Patent EP2985353	NA	coding protein	psRNATarget
HI407340.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||||||**|||||||||||||||| targets:21   UUAUUCAUUUUUAGUGUAUAAAUU   44 Target Full Sequence	2.0	Sequence 5465 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235530.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||*||||||||||||*|||||||| targets:7   UUUUUCCAUUUUAGUUUAUAAAUU   30 Target Full Sequence	1.5	Sequence 1525 from Patent EP2985353	NA	coding protein	psRNATarget
HI403400.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||*||||||||||||*|||||||| targets:7   UUUUUCCAUUUUAGUUUAUAAAUU   30 Target Full Sequence	1.5	Sequence 1525 from Patent EP2074227	NA	coding protein	psRNATarget
JB163861.1	ncRNA:24   AAUAAGGUAAAAUCACAUAUUUAA   1   ||*||||||||||||*|||||||| targets:7   UUUUUCCAUUUUAGUUUAUAAAUU   30 Target Full Sequence	1.5	Sequence 1525 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001175546.1	ncRNA:24   AAU----AAGGUAAAAUCACAUAUUUAA   1   |||----|||=||||||||*|||||||| targets:1560   UUAGUCUUUCUAUUUUAGUUUAUAAAUU   1587 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382850 (LOC100382850), mRNA	NA	coding protein	psRNATarget
BT065541.1	ncRNA:24   AAU----AAGGUAAAAUCACAUAUUUAA   1   |||----|||=||||||||*|||||||| targets:1560   UUAGUCUUUCUAUUUUAGUUUAUAAAUU   1587 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0228I08 mRNA, complete cds	NA	coding protein	psRNATarget
EU948916.1	ncRNA:24   AAU----AAGGUAAAAUCACAUAUUUAA   1   |||----|||=||||||||*|||||||| targets:434   UUAGUCUUUCUAUUUUAGUUUAUAAAUU   461 Target Full Sequence	2.5	Zea mays clone 389794 mRNA sequence	NA	coding protein	psRNATarget