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BaseInfo

ncRNA ID	novel_zma_miR5647
Species	Zea mays
Class	miRNA
Genome position	Chr2:47681435-47681657 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	23
Mature sequence(if miRNA)	201 - UAUCUGGUGCUCAAAGGGGUACC - 223
Stem-loop(if miRNA)	--                      C                                           UC       C  G        AC    A            --A G   UAUCUGGUGCUCAAAGGGGUAC GUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUACAU  AACGGCA CG CUAAUUUU  GAAG ACCCCUUCCACC   G G   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||  |||| ||||||||||||   |   AUAGACCACGAGUUUCCCCAUG CACGAGUACACGUGUAAAAUUUAGACCACGUAGGUAGAAUGUA  UUGUCGU GU GGUUAAAA  CUUC UGGGGAAGGUGG   C G GC                      C                                           GA       C  -        CA    G            AAG A
Stem-loop sequence	UAUCUGGUGCUCAAAGGGGUACCGUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUACAUUCAACGGCACCGGCUAAUUUUACGAAGAACCCCUUCCACCAGGGGACGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUGCUGCUGUUAGAUGUAAGAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACCAGAUACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008645476.2	ncRNA:23   CCAUGGGGAAACUCGUGGUCUAU   1   *|||||||||||||||||||||| targets:932   CGUACCCCUUUGAGCACCAGAUA   954 Target Full Sequence	0.0	PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553522.1	ncRNA:23   CCAUGGGGAAACUCGUGGUCUAU   1   *|||||||||||||=|||||||| targets:32   CGUACCCCUUUGAGUACCAGAUA   54 Target Full Sequence	1.5	PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA	NA	coding protein	psRNATarget