ncRNA ID | novel_zma_miR5647 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:47681435-47681657 [-] |
Reference genome | RefGen_v4 |
Source | SRR2638137 |
Length | 23 |
Mature sequence(if miRNA) | 201 - UAUCUGGUGCUCAAAGGGGUACC - 223 |
Stem-loop(if miRNA) |
--                      C                                           UC       C  G        AC    A            --A G   UAUCUGGUGCUCAAAGGGGUAC GUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUACAU  AACGGCA CG CUAAUUUU  GAAG ACCCCUUCCACC   G G   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||  |||| ||||||||||||   |   AUAGACCACGAGUUUCCCCAUG CACGAGUACACGUGUAAAAUUUAGACCACGUAGGUAGAAUGUA  UUGUCGU GU GGUUAAAA  CUUC UGGGGAAGGUGG   C G GC                      C                                           GA       C  -        CA    G            AAG A |
Stem-loop sequence | UAUCUGGUGCUCAAAGGGGUACCGUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUACAUUCAACGGCACCGGCUAAUUUUACGAAGAACCCCUUCCACCAGGGGACGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUGCUGCUGUUAGAUGUAAGAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACCAGAUACG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_008645476.2 |
|
0.0 | PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020553522.1 |
|
1.5 | PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA | NA | coding protein | psRNATarget |