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BaseInfo

ncRNA ID novel_zma_miR5647
Species Zea mays
Class miRNA
Genome position Chr2:47681435-47681657 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 23
Mature sequence(if miRNA) 201 - UAUCUGGUGCUCAAAGGGGUACC - 223
Stem-loop(if miRNA) --                      C                                           UC       C  G        AC    A            --A G
  UAUCUGGUGCUCAAAGGGGUAC GUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUACAU  AACGGCA CG CUAAUUUU  GAAG ACCCCUUCCACC   G G
  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||| || ||||||||  |||| ||||||||||||   |
  AUAGACCACGAGUUUCCCCAUG CACGAGUACACGUGUAAAAUUUAGACCACGUAGGUAGAAUGUA  UUGUCGU GU GGUUAAAA  CUUC UGGGGAAGGUGG   C G
GC                      C                                           GA       C  -        CA    G            AAG A
Stem-loop sequence UAUCUGGUGCUCAAAGGGGUACCGUGCUCAUGUGCACAUUUUAAAUCUGGUGCAUCCAUCUUACAUUCAACGGCACCGGCUAAUUUUACGAAGAACCCCUUCCACCAGGGGACGAAGGUGGAAGGGGUGCUUCACAAAAUUGGUGCUGCUGUUAGAUGUAAGAUGGAUGCACCAGAUUUAAAAUGUGCACAUGAGCACCGUACCCCUUUGAGCACCAGAUACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008645476.2
ncRNA:23   CCAUGGGGAAACUCGUGGUCUAU   1
  *||||||||||||||||||||||
targets:932   CGUACCCCUUUGAGCACCAGAUA   954

0.0 PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020553522.1
ncRNA:23   CCAUGGGGAAACUCGUGGUCUAU   1
  *|||||||||||||=||||||||
targets:32   CGUACCCCUUUGAGUACCAGAUA   54

1.5 PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA NA coding protein psRNATarget