Search result

BaseInfo

ncRNA ID novel_zma_miR5645
Species Zea mays
Class miRNA
Genome position Chr2:79046890-79047000 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647390
Length 24
Mature sequence(if miRNA) 88 - CUCUAGUAUUGACCCCAAUCCACU - 111
Stem-loop(if miRNA) --                       U   A              A      CUAA
  CUCUAGUAUUGACCCCAAUCCAC UGU UUGAGGUGGAUUGG GUGUAA    A
  ||||||||||||||||||||||| ||| |||||||||||||| ||||||    A
  GAGAUCAUAACUGGGGUUAGGUG ACA AACUCCACCUAACC CACAUU    C
AU                       U   C              C      UAAU
Stem-loop sequence CUCUAGUAUUGACCCCAAUCCACUUGUAUUGAGGUGGAUUGGAGUGUAACUAAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUGGAUUGGGGUCAAUACUAGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI407232.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  |||||||||*||||||||||||||
targets:46   AGUGGAUUGAGGUCAAUACUAGAG   69

1.0 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  |||||||||*||||||||||||||
targets:46   AGUGGAUUGAGGUCAAUACUAGAG   69

1.0 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
JB167693.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  |||||||||*||||||||||||||
targets:46   AGUGGAUUGAGGUCAAUACUAGAG   69

1.0 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
EU963469.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  |||||||||*||||||||||||||
targets:996   AGUGGAUUGAGGUCAAUACUAGAG   1019

1.0 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
EZ069719.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:76   UGUGGAUUGAGGUCAAUACUAGAG   99

1.0 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
JB163953.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:99   UGUGGAUUGAGGUCAAUACUAGAG   122

1.0 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:99   UGUGGAUUGAGGUCAAUACUAGAG   122

1.0 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
HI403492.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:99   UGUGGAUUGAGGUCAAUACUAGAG   122

1.0 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
JB163738.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:107   UGUGGAUUGAGGUCAAUACUAGAG   130

1.0 Sequence 1402 from Patent EP2559767 NA coding protein psRNATarget
LQ235407.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:107   UGUGGAUUGAGGUCAAUACUAGAG   130

1.0 Sequence 1402 from Patent EP2985353 NA coding protein psRNATarget
HI403277.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:107   UGUGGAUUGAGGUCAAUACUAGAG   130

1.0 Sequence 1402 from Patent EP2074227 NA coding protein psRNATarget
EU963895.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*||||||||||||||
targets:1003   UGUGGAUUGUGGUCAAUACUAGAG   1026

1.0 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
BT085111.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||*||||||||||
targets:1214   UGUGGAUUGGGGUAAAUACUAGAG   1237

1.5 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
XM_008646893.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||*|||||||||||||||
targets:3226   UGUGGAUUUGGGUCAAUACUAGAG   3249

1.0 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008646891.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||*|||||||||||||||
targets:3312   UGUGGAUUUGGGUCAAUACUAGAG   3335

1.0 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008646892.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||*|||||||||||||||
targets:3407   UGUGGAUUUGGGUCAAUACUAGAG   3430

1.0 PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA NA coding protein psRNATarget
EU944570.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  **|||||||*||||||||||||||
targets:730   UUUGGAUUGAGGUCAAUACUAGAG   753

1.0 Zea mays clone 222723 mRNA sequence NA coding protein psRNATarget
BT019026.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  **|||||||*||||||||||||||
targets:951   UUUGGAUUGAGGUCAAUACUAGAG   974

1.0 Zea mays clone Contig531.F mRNA sequence NA coding protein psRNATarget
BT053958.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1470   UGUGGAUUGGGGUCAAUACUAAAU   1493

2.5 Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds NA coding protein psRNATarget
EU960123.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  **|||||||*||||||||||||||
targets:1577   UUUGGAUUGAGGUCAAUACUAGAG   1600

1.0 Zea mays clone 221999 choline/ethanolamine kinase mRNA, complete cds NA coding protein psRNATarget
BT066939.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1544   UGUGGAUUGGGGUCAAUACUAAAU   1567

2.5 Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds NA coding protein psRNATarget
BT055962.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1676   UGUGGAUUGGGGUCAAUACUAAAU   1699

2.5 Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds NA coding protein psRNATarget
NM_001153225.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1676   UGUGGAUUGGGGUCAAUACUAAAU   1699

2.5 Zea mays choline/ethanolamine kinase (LOC100280298), mRNA NA coding protein psRNATarget
EU962737.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1697   UGUGGAUUGGGGUCAAUACUAAAU   1720

2.5 Zea mays clone 245096 mRNA sequence NA coding protein psRNATarget
XM_020547679.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1718   UGUGGAUUGGGGUCAAUACUAAAU   1741

2.5 PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547680.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||||||||||||||*|*
targets:1731   UGUGGAUUGGGGUCAAUACUAAAU   1754

2.5 PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA NA coding protein psRNATarget
LQ239297.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*|||*||||||||||
targets:88   CGUGGAUUGCGGUGAAUACUAGAG   111

2.5 Sequence 5292 from Patent EP2985353 NA coding protein psRNATarget
JB167628.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*|||*||||||||||
targets:88   CGUGGAUUGCGGUGAAUACUAGAG   111

2.5 Sequence 5292 from Patent EP2559767 NA coding protein psRNATarget
HI407167.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*|||*||||||||||
targets:88   CGUGGAUUGCGGUGAAUACUAGAG   111

2.5 Sequence 5292 from Patent EP2074227 NA coding protein psRNATarget
HI403396.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||*||||*||||||||||||||
targets:97   UGUGAAUUGAGGUCAAUACUAGAG   120

1.0 Sequence 1521 from Patent EP2074227 NA coding protein psRNATarget
JB163857.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||*||||*||||||||||||||
targets:97   UGUGAAUUGAGGUCAAUACUAGAG   120

1.0 Sequence 1521 from Patent EP2559767 NA coding protein psRNATarget
LQ235526.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||*||||*||||||||||||||
targets:97   UGUGAAUUGAGGUCAAUACUAGAG   120

1.0 Sequence 1521 from Patent EP2985353 NA coding protein psRNATarget
EU941642.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**||||||||||||||
targets:33   UGUGGAUUUUGGUCAAUACUAGAG   56

2.0 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**||||||||||||||
targets:834   UGUGGAUUAUGGUCAAUACUAGAG   857

2.0 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**||||||||||||||
targets:834   UGUGGAUUAUGGUCAAUACUAGAG   857

2.0 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
BT085755.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**||||||||||||||
targets:906   UGUGGAUUUUGGUCAAUACUAGAG   929

2.0 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**||||||||||||||
targets:906   UGUGGAUUUUGGUCAAUACUAGAG   929

2.0 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
EU963259.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**||||||||||||||
targets:1077   UGUGGAUUAUGGUCAAUACUAGAG   1100

2.0 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT055428.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||||||||*|||*||||||||||
targets:36   CGUGGAUUGAGGUGAAUACUAGAG   59

2.5 Zea mays full-length cDNA clone ZM_BFb0186F19 mRNA, complete cds NA coding protein psRNATarget
XM_008650840.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||*=|||||*||||||||||||
targets:3415   UGUGCGUUGGGAUCAAUACUAGAG   3438

2.5 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
XM_008659899.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *|||||||**|||||||||||||*
targets:2151   UGUGGAUUUAGGUCAAUACUAGAA   2174

3.0 PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA NA coding protein psRNATarget
EZ108049.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*|*||||||||||||
targets:286   UGUAGAUUGAGCUCAAUACUAGAG   309

2.5 TSA: Zea mays contig43707, mRNA sequence NA coding protein psRNATarget
BT066687.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*|*||||||||||||
targets:893   UGUAGAUUGAGCUCAAUACUAGAG   916

2.5 Zea mays full-length cDNA clone ZM_BFb0047M01 mRNA, complete cds NA coding protein psRNATarget
NM_001175915.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*|*||||||||||||
targets:893   UGUAGAUUGAGCUCAAUACUAGAG   916

2.5 Zea mays U2 small nuclear ribonucleoprotein B'' (LOC100383254), mRNA NA coding protein psRNATarget
EU962825.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*|*||||||||||||
targets:977   UGUAGAUUGAGCUCAAUACUAGAG   1000

2.5 Zea mays clone 245793 mRNA sequence NA coding protein psRNATarget
AY103846.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*|*||||||||||||
targets:997   UGUAGAUUGAGCUCAAUACUAGAG   1020

2.5 Zea mays PCO130752 mRNA sequence NA coding protein psRNATarget
BT018215.1
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*||*|||||||||||
targets:1408   UGUUGAUUGAGGCCAAUACUAGAG   1431

2.5 Zea mays clone EL01N0561A07.c mRNA sequence NA coding protein psRNATarget
XM_008648135.2
ncRNA:24   UCACCUAACCCCAGUUAUGAUCUC   1
  *||*|||||*||*|||||||||||
targets:1365   UGUUGAUUGAGGCCAAUACUAGAG   1388

2.5 PREDICTED: Zea mays uncharacterized LOC103627823 (LOC103627823), mRNA NA coding protein psRNATarget