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BaseInfo

ncRNA ID	novel_zma_miR5642
Species	Zea mays
Class	miRNA
Genome position	Chr10:111336052-111336180 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	1 - GGCAUGUUUGGUUUGUGGCUAACU - 24
Stem-loop(if miRNA)	---  C            -  G      G                -------------        - G  CG    GG AUGUUUGGUUUG UG CUAACU UGCCACACUUUGCCUA             AGGUUAGU C UC  A    || |||||||||||| || |||||| ||||||||||||||||             |||||||| | ||    CC UACAAACCAAAC AC GAUUGA ACGGUGUGAAACGGAU             UCCAAUCA G AG  A AUC  U            G  G      -                UGAAAACACGGAU        A A  UU
Stem-loop sequence	GGCAUGUUUGGUUUGUGGCUAACUGUGCCACACUUUGCCUAAGGUUAGUCGUCCGAAUUGAAGAACUAACCUUAGGCACAAAAGUUAGGCAAAGUGUGGCAAGUUAGGCAGCAAACCAAACAUUCCCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235416.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||||=| targets:105   AGUUAGCCACGAACCAAACAUGUC   128 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||||=| targets:105   AGUUAGCCACGAACCAAACAUGUC   128 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||||=| targets:105   AGUUAGCCACGAACCAAACAUGUC   128 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*|||||||||||||||||||||| targets:1408   AUUUAGCCACAAACCAAACAUGCC   1431 Target Full Sequence	0.0	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*|||||||||||||||||||||| targets:885   AUUUAGCCACAAACCAAACAUGCC   908 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||||||||||||*||| targets:2660   AGUUAGCCACAAACCAAACAAGCC   2683 Target Full Sequence	1.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:105   AGUUAGCCACGAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:105   AGUUAGCCACGAACCAAACAAGCC   128 Target Full Sequence	2.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:105   AGUUAGCCACGAACCAAACAAGCC   128 Target Full Sequence	2.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:105   AGUUAGCCACGAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:105   AGUUAGCCACGAACCAAACAAGCC   128 Target Full Sequence	2.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:105   AGUUAGCCACGAACCAAACAGGCC   128 Target Full Sequence	2.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:107   AGUUAGCCACGAACCAAACAAGCC   130 Target Full Sequence	2.5	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:107   AGUUAGCCACGAACCAAACAAGCC   130 Target Full Sequence	2.5	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:107   AGUUAGCCACGAACCAAACAAGCC   130 Target Full Sequence	2.5	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:1066   AGUUAGCCACGAACCAAACAGGCC   1089 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:1019   AGUUAGCCACGAACCAAACAAGCC   1042 Target Full Sequence	2.5	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:1019   AGUUAGCCACGAACCAAACAAGCC   1042 Target Full Sequence	2.5	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:816   AGUUAGCCACGAACCAAACAGGCC   839 Target Full Sequence	2.5	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   ||||||||||=|||||||||*||| targets:2489   AGUUAGCCACGAACCAAACAGGCC   2512 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
BT064583.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||=||=|||||||||||||| targets:1733   AUUUAGUCAUAAACCAAACAUGCC   1756 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||=||=|||||||||||||| targets:1803   AUUUAGUCAUAAACCAAACAUGCC   1826 Target Full Sequence	2.0	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||=||=|||||||||||||| targets:1803   AUUUAGUCAUAAACCAAACAUGCC   1826 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   UCAAUCGGU-GUUUGGUUUGUACGG   1   ||||||*||-||||||||||||||| targets:104   AGUUAGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	3.0	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   UCAAUCGGU-GUUUGGUUUGUACGG   1   ||||||*||-||||||||||||||| targets:104   AGUUAGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	3.0	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   UCAAUCGGU-GUUUGGUUUGUACGG   1   ||||||*||-||||||||||||||| targets:104   AGUUAGGCAGCAAACCAAACAUGCC   128 Target Full Sequence	3.0	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||||||||||||||||*||| targets:993   AAUUAGCCACAAACCAAACAGGCC   1016 Target Full Sequence	1.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||||||||||||||||*||| targets:941   AUUUAGCCACAAACCAAACAGGCC   964 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||||||||||||||||*||| targets:1425   AUUUAGCCACAAACCAAACAGGCC   1448 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*||||||||||||||||||*||| targets:1583   AUUUAGCCACAAACCAAACAGGCC   1606 Target Full Sequence	1.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*|||*||||||||||||||*||| targets:213   AUUUAACCACAAACCAAACAGGCC   236 Target Full Sequence	2.5	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   UCAAUCGGUGUUUGGUUUGUACGG   1   |*|||*||||||||||||||*||| targets:213   AUUUAACCACAAACCAAACAGGCC   236 Target Full Sequence	2.5	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget