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BaseInfo

ncRNA ID novel_zma_miR5641
Species Zea mays
Class miRNA
Genome position Chr2:107034615-107034672 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 35 - ACCGUCCGCCCUUGUGCAGAGAGC - 58
Stem-loop(if miRNA) --  C      --   U    A   -A  AC
  AC GUCCGC  CCU GUGC GAG  GC  C
  || ||||||  ||| |||| |||  ||
  UG CAGGCG  GGA CACG CUC  CG  G
CC  C      CU   C    -   CG  CC
Stem-loop sequence ACCGUCCGCCCUUGUGCAGAGAGCACCGCCGCGCCUCGCACCAGGUCGCGGACCGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU970066.1
ncRNA:24   CGAGAGACGUGUUCCCGCCUGCCA   1
  ||*|||||||||=|||||||||||
targets:821   GCCCUCUGCACAGGGGCGGACGGU   844

1.5 Zea mays clone 339328 mRNA sequence NA coding protein psRNATarget
EU970066.1
ncRNA:24   CGAGAGACGUGUUCCCGCCUGCCA   1
  *||||||||=|||||||||||*||
targets:893   ACUCUCUGCGCAAGGGCGGACUGU   916

2.5 Zea mays clone 339328 mRNA sequence NA coding protein psRNATarget
Y15069.1
ncRNA:24   CGA---GAGACGUGUUCCCGCCUGCCA   1
  |||---|||*|*=||||||||||||||
targets:155   GCUGUCCUCCGGGCAAGGGCGGACGGU   181

3.0 Zea mays mRNA for cinnamoyl-CoA reductase NA coding protein psRNATarget
NM_001112245.2
ncRNA:24   CGA---GAGACGUGUUCCCGCCUGCCA   1
  |||---|||*|*=||||||||||||||
targets:165   GCUGUCCUCCGGGCAAGGGCGGACGGU   191

3.0 Zea mays cinnamoyl CoA reductase 2 (cncr2), mRNA NA coding protein psRNATarget