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BaseInfo

ncRNA ID ath-miRf10064-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - AUCGCCGGUGGAAUCUCUCCGGUGA - NA
Stem-loop(if miRNA) -UC  A  U    U        U           --GU   A CA          -----UG   G      ---U  AGGUUUCCGAUCUCCG
   CG UC CCGG GGGAUUUC CCGGCGAUGUU    UGU C  AGCUAUGAAU       CUC AGUUUC    GG                G
   || || |||| |||||||| |||||||||||    ||| |  ||||||||||       ||| ||||||    ||                U
   GC AG GGCC CUCUAAGG GGCCGCUAUAG    ACG G  UCGAUGCUUG       GAG UCAGAG    UA                G
AGA  -  U    U        U           AGUU   A AC          CUAACUA   -      UUAA  GAGUUGCCAUGUUAGG
Stem-loop sequence UCCGAUCUCCGGUGGGAUUUCUCCGGCGAUGUUGUUGUACCAAGCUAUGAAUUGCUCGAGUUUCUGGAGGUUUCCGAUCUCCGGUGGGAUUGUACCGUUGAGAUAAUUGAGACUGAGAUCAAUCGUUCGUAGCUCAGAGCAUUGAGAUAUCGCCGGUGGAAUCUCUCCGGUGACGAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_126256.4
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |||||||||||||||||||||||||
targets:1248   UCACCGGAGAGAUUCCACCGGCGAU   1272

0.0 Arabidopsis thaliana BRI1-like 2 (BRL2), mRNA BRI1-like 2(BRL2) coding protein psRNATarget
AY074313.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |||||||||||||||||||||||||
targets:1200   UCACCGGAGAGAUUCCACCGGCGAU   1224

0.0 Arabidopsis thaliana putative receptor protein kinase (At2g01950) mRNA, complete cds NA coding protein psRNATarget
FJ708687.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |||||||||||||||||||||||||
targets:1160   UCACCGGAGAGAUUCCACCGGCGAU   1184

0.0 Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds NA coding protein psRNATarget
NM_114827.4
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |*|||||||||||||||||||*|||
targets:925   UAACCGGAGAGAUUCCACCGGAGAU   949

1.5 Arabidopsis thaliana Leucine-rich receptor-like protein kinase family protein (BAM2), mRNA Leucine-rich receptor-like protein kinase family protein(BAM2) coding protein psRNATarget
BT005722.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |*|||||||||||||||||||*|||
targets:822   UAACCGGAGAGAUUCCACCGGAGAU   846

1.5 Arabidopsis thaliana clone RAFL15-39-P09 (R50199) putative leucine-rich repeat transmembrane protein kinase (At3g49670) mRNA, complete cds NA coding protein psRNATarget
AK228595.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |*|||||||||||||||||||*|||
targets:822   UAACCGGAGAGAUUCCACCGGAGAU   846

1.5 Arabidopsis thaliana mRNA for receptor protein kinase like protein, complete cds, clone: RAFL15-39-P09 NA coding protein psRNATarget
BT006113.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |*|||||||||||||||||||*|||
targets:752   UAACCGGAGAGAUUCCACCGGAGAU   776

1.5 Arabidopsis thaliana clone U50199 putative leucine-rich repeat transmembrane protein kinase (At3g49670) mRNA, complete cds NA coding protein psRNATarget
FJ708737.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |*|||||||||||||||||||*|||
targets:752   UAACCGGAGAGAUUCCACCGGAGAU   776

1.5 Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds NA coding protein psRNATarget
NM_180611.2
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  ||=|||||*|*||||||||||||||
targets:930   UCGCCGGAAAAAUUCCACCGGCGAU   954

2.0 Arabidopsis thaliana Leucine-rich receptor-like protein kinase family protein (LRR XI-23), mRNA Leucine-rich receptor-like protein kinase family protein(LRR XI-23) coding protein psRNATarget
AY062680.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  ||=|||||*|*||||||||||||||
targets:770   UCGCCGGAAAAAUUCCACCGGCGAU   794

2.0 Arabidopsis thaliana Unknown protein (At1g09970; F21M12.36) mRNA, complete cds NA coding protein psRNATarget
NM_100871.3
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  ||=|||||*|*||||||||||||||
targets:711   UCGCCGGAAAAAUUCCACCGGCGAU   735

2.0 Arabidopsis thaliana Leucine-rich receptor-like protein kinase family protein (LRR XI-23), mRNA Leucine-rich receptor-like protein kinase family protein(LRR XI-23) coding protein psRNATarget
AY050535.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  ||=|||||*|*||||||||||||||
targets:711   UCGCCGGAAAAAUUCCACCGGCGAU   735

2.0 Arabidopsis thaliana leucine-rich repeat receptor-like kinase F21M12.36 mRNA, complete cds NA coding protein psRNATarget
FJ708631.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  ||=|||||*|*||||||||||||||
targets:620   UCGCCGGAAAAAUUCCACCGGCGAU   644

2.0 Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds NA coding protein psRNATarget
NM_106232.4
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |=*||||*|||||||||||*|||||
targets:1722   UUUCCGGCGAGAUUCCACCUGCGAU   1746

2.5 Arabidopsis thaliana Leucine-rich receptor-like protein kinase family protein (CLV1), mRNA Leucine-rich receptor-like protein kinase family protein(CLV1) coding protein psRNATarget
BX815769.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |=*||||*|||||||||||*|||||
targets:1541   UUUCCGGCGAGAUUCCACCUGCGAU   1565

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS92ZD10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
FJ708682.1
ncRNA:25   AGUGGCCUCUCUAAGGUGGCCGCUA   1
  |=*||||*|||||||||||*|||||
targets:1403   UUUCCGGCGAGAUUCCACCUGCGAU   1427

2.5 Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds NA coding protein psRNATarget
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