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BaseInfo

ncRNA ID	novel_zma_miR5612
Species	Zea mays
Class	miRNA
Genome position	Chr1:7149095-7149160 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647385;SRR2647387;SRR2647389;SRR2647390;SRR2647391
Length	24
Mature sequence(if miRNA)	43 - GUUUCUAUUUAGUUGUCGCUGGAU - 66
Stem-loop(if miRNA)	--     UA                    U  A   GUUUC  UUUAGUUGUCGCUGGAUAGU UA U   |||||  |||||||||||||||||||| ||   CAAAG  AAAUCAACAGCGACCUAUCA GU U GG     CA                    C  U
Stem-loop sequence	GUUUCUAUUUAGUUGUCGCUGGAUAGUUUAAUUUUGCACUAUCCAGCGACAACUAAAACGAAACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403072.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:43   AUCCAGCGACAACUAAAAAGAAAC   66 Target Full Sequence	1.5	Sequence 1197 from Patent EP2074227	NA	coding protein	psRNATarget
JB163533.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:43   AUCCAGCGACAACUAAAAAGAAAC   66 Target Full Sequence	1.5	Sequence 1197 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235202.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:43   AUCCAGCGACAACUAAAAAGAAAC   66 Target Full Sequence	1.5	Sequence 1197 from Patent EP2985353	NA	coding protein	psRNATarget
JB170012.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:46   AUCCAGCGACAACUAAAAAGAAAC   69 Target Full Sequence	1.5	Sequence 7676 from Patent EP2559767	NA	coding protein	psRNATarget
HI409551.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:46   AUCCAGCGACAACUAAAAAGAAAC   69 Target Full Sequence	1.5	Sequence 7676 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241681.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:46   AUCCAGCGACAACUAAAAAGAAAC   69 Target Full Sequence	1.5	Sequence 7676 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241364.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:53   AUCCAGCGACAACUAAAAAGAAAC   76 Target Full Sequence	1.5	Sequence 7359 from Patent EP2985353	NA	coding protein	psRNATarget
HI409234.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:53   AUCCAGCGACAACUAAAAAGAAAC   76 Target Full Sequence	1.5	Sequence 7359 from Patent EP2074227	NA	coding protein	psRNATarget
JB169695.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:53   AUCCAGCGACAACUAAAAAGAAAC   76 Target Full Sequence	1.5	Sequence 7359 from Patent EP2559767	NA	coding protein	psRNATarget
HI407324.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:56   AUCCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5449 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239454.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:56   AUCCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5449 from Patent EP2985353	NA	coding protein	psRNATarget
JB167785.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:56   AUCCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5449 from Patent EP2559767	NA	coding protein	psRNATarget
EZ089411.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:357   AUCCAGCGACAACUAAAAAGAAAC   380 Target Full Sequence	1.5	TSA: Zea mays contig25057, mRNA sequence	NA	coding protein	psRNATarget
BT062468.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:621   AUCCAGCGACAACUAAAAAGAAAC   644 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:1212   AUCCAGCGACAACUAAAAAGAAAC   1235 Target Full Sequence	1.5	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156357.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:1565   AUCCAGCGACAACUAAAAAGAAAC   1588 Target Full Sequence	1.5	Zea mays Acetylornithine deacetylase (pco121857a), mRNA	NA	coding protein	psRNATarget
EU964807.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:1565   AUCCAGCGACAACUAAAAAGAAAC   1588 Target Full Sequence	1.5	Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:1201   AUCCAGCGACAACUAAAAAGAAAC   1224 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551485.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||||||||||||*|||||| targets:2578   AUCCAGCGACAACUAAAAAGAAAC   2601 Target Full Sequence	1.5	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167691.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||||||||||*|||||| targets:56   AUUCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
HI407230.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||||||||||*|||||| targets:56   AUUCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||||||||||*|||||| targets:56   AUUCAGCGACAACUAAAAAGAAAC   79 Target Full Sequence	1.5	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008656230.2	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||||||||||*|||||| targets:37   AUUCAGCGACAACUAAAAAGAAAC   60 Target Full Sequence	1.5	PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA	NA	coding protein	psRNATarget
LQ241813.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||=|||||||*|||||| targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69 Target Full Sequence	2.5	Sequence 7808 from Patent EP2985353	NA	coding protein	psRNATarget
HI409683.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||=|||||||*|||||| targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69 Target Full Sequence	2.5	Sequence 7808 from Patent EP2074227	NA	coding protein	psRNATarget
JB170144.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||=||||||=|||||||*|||||| targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69 Target Full Sequence	2.5	Sequence 7808 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238250.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||||||||*||||||||*|||||| targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69 Target Full Sequence	2.5	Sequence 4245 from Patent EP2985353	NA	coding protein	psRNATarget
HI406120.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||||||||*||||||||*|||||| targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69 Target Full Sequence	2.5	Sequence 4245 from Patent EP2074227	NA	coding protein	psRNATarget
JB166581.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   ||||||||*||||||||*|||||| targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69 Target Full Sequence	2.5	Sequence 4245 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238487.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||*|||||||||||*|||||| targets:48   AUCCAACGACAACUAAAAAGAAAC   71 Target Full Sequence	2.5	Sequence 4482 from Patent EP2985353	NA	coding protein	psRNATarget
HI406357.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||*|||||||||||*|||||| targets:48   AUCCAACGACAACUAAAAAGAAAC   71 Target Full Sequence	2.5	Sequence 4482 from Patent EP2074227	NA	coding protein	psRNATarget
JB166818.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||*|||||||||||*|||||| targets:48   AUCCAACGACAACUAAAAAGAAAC   71 Target Full Sequence	2.5	Sequence 4482 from Patent EP2559767	NA	coding protein	psRNATarget
BT055583.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||*|||||||||||||*|||||| targets:885   AUCGAGCGACAACUAAAAAGAAAC   908 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153043.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||*|||||||||||||*|||||| targets:885   AUCGAGCGACAACUAAAAAGAAAC   908 Target Full Sequence	1.5	Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA	NA	coding protein	psRNATarget
EU971439.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||*|||||||||*|||||| targets:2163   AUCCAGCUACAACUAAAAAGAAAC   2186 Target Full Sequence	2.5	Zea mays clone 364738 cyclin-like F-box mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158152.1	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||||||*|||||||||*|||||| targets:2163   AUCCAGCUACAACUAAAAAGAAAC   2186 Target Full Sequence	2.5	Zea mays cyclin-like F-box (LOC100285258), mRNA	NA	coding protein	psRNATarget
XM_008667486.2	ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1   |||-|||||||||||||*|||||| targets:1383   AUC-AGCGACAACUAAAAAGAAAC   1405 Target Full Sequence	1.5	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget