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BaseInfo

ncRNA ID novel_zma_miR5612
Species Zea mays
Class miRNA
Genome position Chr1:7149095-7149160 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647385;SRR2647387;SRR2647389;SRR2647390;SRR2647391
Length 24
Mature sequence(if miRNA) 43 - GUUUCUAUUUAGUUGUCGCUGGAU - 66
Stem-loop(if miRNA) --     UA                    U  A
  GUUUC  UUUAGUUGUCGCUGGAUAGU UA U
  |||||  |||||||||||||||||||| ||
  CAAAG  AAAUCAACAGCGACCUAUCA GU U
GG     CA                    C  U
Stem-loop sequence GUUUCUAUUUAGUUGUCGCUGGAUAGUUUAAUUUUGCACUAUCCAGCGACAACUAAAACGAAACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403072.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:43   AUCCAGCGACAACUAAAAAGAAAC   66

1.5 Sequence 1197 from Patent EP2074227 NA coding protein psRNATarget
JB163533.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:43   AUCCAGCGACAACUAAAAAGAAAC   66

1.5 Sequence 1197 from Patent EP2559767 NA coding protein psRNATarget
LQ235202.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:43   AUCCAGCGACAACUAAAAAGAAAC   66

1.5 Sequence 1197 from Patent EP2985353 NA coding protein psRNATarget
JB170012.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:46   AUCCAGCGACAACUAAAAAGAAAC   69

1.5 Sequence 7676 from Patent EP2559767 NA coding protein psRNATarget
HI409551.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:46   AUCCAGCGACAACUAAAAAGAAAC   69

1.5 Sequence 7676 from Patent EP2074227 NA coding protein psRNATarget
LQ241681.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:46   AUCCAGCGACAACUAAAAAGAAAC   69

1.5 Sequence 7676 from Patent EP2985353 NA coding protein psRNATarget
LQ241364.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:53   AUCCAGCGACAACUAAAAAGAAAC   76

1.5 Sequence 7359 from Patent EP2985353 NA coding protein psRNATarget
HI409234.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:53   AUCCAGCGACAACUAAAAAGAAAC   76

1.5 Sequence 7359 from Patent EP2074227 NA coding protein psRNATarget
JB169695.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:53   AUCCAGCGACAACUAAAAAGAAAC   76

1.5 Sequence 7359 from Patent EP2559767 NA coding protein psRNATarget
HI407324.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:56   AUCCAGCGACAACUAAAAAGAAAC   79

1.5 Sequence 5449 from Patent EP2074227 NA coding protein psRNATarget
LQ239454.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:56   AUCCAGCGACAACUAAAAAGAAAC   79

1.5 Sequence 5449 from Patent EP2985353 NA coding protein psRNATarget
JB167785.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:56   AUCCAGCGACAACUAAAAAGAAAC   79

1.5 Sequence 5449 from Patent EP2559767 NA coding protein psRNATarget
EZ089411.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:357   AUCCAGCGACAACUAAAAAGAAAC   380

1.5 TSA: Zea mays contig25057, mRNA sequence NA coding protein psRNATarget
BT062468.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:621   AUCCAGCGACAACUAAAAAGAAAC   644

1.5 Zea mays full-length cDNA clone ZM_BFb0302A02 mRNA, complete cds NA coding protein psRNATarget
EU971616.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:1212   AUCCAGCGACAACUAAAAAGAAAC   1235

1.5 Zea mays clone 368130 rieske domain containing protein mRNA, complete cds NA coding protein psRNATarget
NM_001156357.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:1565   AUCCAGCGACAACUAAAAAGAAAC   1588

1.5 Zea mays Acetylornithine deacetylase (pco121857a), mRNA NA coding protein psRNATarget
EU964807.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:1565   AUCCAGCGACAACUAAAAAGAAAC   1588

1.5 Zea mays clone 281665 acetylornithine deacetylase mRNA, complete cds NA coding protein psRNATarget
XM_008674191.2
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:1201   AUCCAGCGACAACUAAAAAGAAAC   1224

1.5 PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551485.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||||||||||||*||||||
targets:2578   AUCCAGCGACAACUAAAAAGAAAC   2601

1.5 PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100279319), transcript variant X1, mRNA NA coding protein psRNATarget
JB167691.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||||||||||*||||||
targets:56   AUUCAGCGACAACUAAAAAGAAAC   79

1.5 Sequence 5355 from Patent EP2559767 NA coding protein psRNATarget
HI407230.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||||||||||*||||||
targets:56   AUUCAGCGACAACUAAAAAGAAAC   79

1.5 Sequence 5355 from Patent EP2074227 NA coding protein psRNATarget
LQ239360.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||||||||||*||||||
targets:56   AUUCAGCGACAACUAAAAAGAAAC   79

1.5 Sequence 5355 from Patent EP2985353 NA coding protein psRNATarget
XM_008656230.2
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||||||||||*||||||
targets:37   AUUCAGCGACAACUAAAAAGAAAC   60

1.5 PREDICTED: Zea mays phosphatidylinositol transfer protein 2 (LOC103634487), mRNA NA coding protein psRNATarget
LQ241813.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||=|||||||*||||||
targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69

2.5 Sequence 7808 from Patent EP2985353 NA coding protein psRNATarget
HI409683.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||=|||||||*||||||
targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69

2.5 Sequence 7808 from Patent EP2074227 NA coding protein psRNATarget
JB170144.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||=||||||=|||||||*||||||
targets:46   AUUCAGCGAUAACUAAAAAGAAAC   69

2.5 Sequence 7808 from Patent EP2559767 NA coding protein psRNATarget
LQ238250.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||||||||*||||||||*||||||
targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69

2.5 Sequence 4245 from Patent EP2985353 NA coding protein psRNATarget
HI406120.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||||||||*||||||||*||||||
targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69

2.5 Sequence 4245 from Patent EP2074227 NA coding protein psRNATarget
JB166581.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  ||||||||*||||||||*||||||
targets:46   AUCCAGCGCCAACUAAAAAGAAAC   69

2.5 Sequence 4245 from Patent EP2559767 NA coding protein psRNATarget
LQ238487.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||*|||||||||||*||||||
targets:48   AUCCAACGACAACUAAAAAGAAAC   71

2.5 Sequence 4482 from Patent EP2985353 NA coding protein psRNATarget
HI406357.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||*|||||||||||*||||||
targets:48   AUCCAACGACAACUAAAAAGAAAC   71

2.5 Sequence 4482 from Patent EP2074227 NA coding protein psRNATarget
JB166818.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||*|||||||||||*||||||
targets:48   AUCCAACGACAACUAAAAAGAAAC   71

2.5 Sequence 4482 from Patent EP2559767 NA coding protein psRNATarget
BT055583.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||*|||||||||||||*||||||
targets:885   AUCGAGCGACAACUAAAAAGAAAC   908

1.5 Zea mays full-length cDNA clone ZM_BFc0049P16 mRNA, complete cds NA coding protein psRNATarget
NM_001153043.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||*|||||||||||||*||||||
targets:885   AUCGAGCGACAACUAAAAAGAAAC   908

1.5 Zea mays uncharacterized LOC100280105 (LOC100280105), mRNA NA coding protein psRNATarget
EU971439.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||*|||||||||*||||||
targets:2163   AUCCAGCUACAACUAAAAAGAAAC   2186

2.5 Zea mays clone 364738 cyclin-like F-box mRNA, complete cds NA coding protein psRNATarget
NM_001158152.1
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||||||*|||||||||*||||||
targets:2163   AUCCAGCUACAACUAAAAAGAAAC   2186

2.5 Zea mays cyclin-like F-box (LOC100285258), mRNA NA coding protein psRNATarget
XM_008667486.2
ncRNA:24   UAGGUCGCUGUUGAUUUAUCUUUG   1
  |||-|||||||||||||*||||||
targets:1383   AUC-AGCGACAACUAAAAAGAAAC   1405

1.5 PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA NA coding protein psRNATarget