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BaseInfo

ncRNA ID novel_zma_miR5611
Species Zea mays
Class miRNA
Genome position Chr5:205394971-205395052 [+]
Reference genome RefGen_v4
Source SRR1618883;SRR5100255
Length 25
Mature sequence(if miRNA) 1 - CAGCUGAGAAUUAGGAGCCUUGAGA - 25
Stem-loop(if miRNA) --                 C      A      ------  C G
  CAGCUGAGAAUUAGGAG CUUGAG GUACCU      GU G G
  ||||||||||||||||| |||||| ||||||      || |
  GUCGACUCUUAAUCCUC GAACUC CAUGGG      UA C G
UG                 A      C      GAUUAA  C A
Stem-loop sequence CAGCUGAGAAUUAGGAGCCUUGAGAGUACCUGUCGGGGACCAUAAUUAGGGGUACCCUCAAGACUCCUAAUUCUCAGCUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038063.1
ncRNA:25   AGAGUUCCGAGGAUUAAGAGUCGAC   1
  *||||||||*|||||||||||||||
targets:308   CCUCAAGGCGCCUAAUUCUCAGCUG   332

1.0 Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds NA coding protein psRNATarget