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BaseInfo

ncRNA ID novel_zma_miR5610
Species Zea mays
Class miRNA
Genome position Chr1:8981662-8981743 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343
Length 24
Mature sequence(if miRNA) 59 - GUUCCUUGUGUGCCACUGGCCUCA - 82
Stem-loop(if miRNA) --                   CCUCA     CAUAAACACC
  GUUCCUUGUGUGCCACUGG     CAUAU          A
  |||||||||||||||||||     |||||          A
  UAAGGAACACACGGUGACU     GUAUA          A
AG                   -CACC     UCCAUAUACA
Stem-loop sequence GUUCCUUGUGUGCCACUGGCCUCACAUAUCAUAAACACCAAAACAUAUACCUAUAUGCCACUCAGUGGCACACAAGGAAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU975854.1
ncRNA:24   ACUCCGGUCACCGUGUGUUCCUUG   1
  ||=||||||||||||||||||=|=
targets:709   UGGGGCCAGUGGCACACAAGGGAU   732

2.5 Zea mays clone 503152 chaperone protein dnaJ mRNA, complete cds NA coding protein psRNATarget
BT085283.1
ncRNA:24   ACUCCGGUCACCGUGUGUUCCUUG   1
  ||=||||||||||||||||||=|=
targets:962   UGGGGCCAGUGGCACACAAGGGAU   985

2.5 Zea mays full-length cDNA clone ZM_BFb0360M07 mRNA, complete cds NA coding protein psRNATarget
EU956996.1
ncRNA:24   ACUCCGGUCACCGUGUGUUCCUUG   1
  ||=|||||||||||=||||||||=
targets:1624   UGGGGCCAGUGGCAUACAAGGAAU   1647

2.5 Zea mays clone 1579828 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU967272.1
ncRNA:24   ACUCCGGUCACCGUGUGUUCCUUG   1
  *****|||||||||=||||||||=
targets:629   AUUUUCCAGUGGCAUACAAGGAAU   652

2.5 Zea mays clone 300934 hypothetical protein mRNA, complete cds NA coding protein psRNATarget