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BaseInfo

ncRNA ID	novel_zma_miR5606
Species	Zea mays
Class	miRNA
Genome position	Chr1:16364164-16364281 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	95 - GAGCUAGUUUGGAAACCCCAAUUU - 118
Stem-loop(if miRNA)	--                        C                   CC  A    UUUA   GAGCUAGUUUGGAAACCCCAAUUU CCACGGGAUUCUCAUUUUU  AA GGAA    G   |||||||||||||||||||||||| |||||||||||||||||||  || ||||    U   CUCGAUCAAACCUUUGGGGUUAAA GGUGCCCUAAGAGUAAAAA  UU CCUU    U AU                        A                   -A  C    UUAU
Stem-loop sequence	GAGCUAGUUUGGAAACCCCAAUUUCCCACGGGAUUCUCAUUUUUCCAAAGGAAUUUAGUUUAUUUUCCCUUAAAAAAUGAGAAUCCCGUGGAAAAUUGGGGUUUCCAAACUAGCUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU951374.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||||||||||||||||||*| targets:413   AAAAUGGGGUUUCCAAACUAGCCC   436 Target Full Sequence	1.5	Zea mays clone 697858 mRNA sequence	NA	coding protein	psRNATarget
BT088407.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||||*||||||||||||=|| targets:1102   AAAAUGGGAUUUCCAAACUAGUUC   1125 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0179M16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550081.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   =||||*|*|||||||||||||||| targets:2429   GAAUUUGAGUUUCCAAACUAGCUC   2452 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109944788 (LOC109944788), mRNA	NA	coding protein	psRNATarget
XM_008676336.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   ==|||*|*|||||||||||||||| targets:4376   GGAUUUGAGUUUCCAAACUAGCUC   4399 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676333.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   ==|||*|*|||||||||||||||| targets:4390   GGAUUUGAGUUUCCAAACUAGCUC   4413 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676335.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   ==|||*|*|||||||||||||||| targets:4403   GGAUUUGAGUUUCCAAACUAGCUC   4426 Target Full Sequence	2.0	PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   ||*|||*||||||||||*|||||| targets:225   AAUUUGAGGUUUCCAAAGUAGCUC   248 Target Full Sequence	2.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
XM_008652590.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||*|||||||||||||||*| targets:971   AAAAUGAGGUUUCCAAACUAGCCC   994 Target Full Sequence	2.5	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008652589.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||*|||||||||||||||*| targets:998   AAAAUGAGGUUUCCAAACUAGCCC   1021 Target Full Sequence	2.5	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT034002.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||*|||||||||||||||*| targets:1016   AAAAUGAGGUUUCCAAACUAGCCC   1039 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044B05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137218.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||*|||||||||||||||*| targets:1016   AAAAUGAGGUUUCCAAACUAGCCC   1039 Target Full Sequence	2.5	Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), mRNA	NA	coding protein	psRNATarget
XM_008652587.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||*|||||||||||||||*| targets:1076   AAAAUGAGGUUUCCAAACUAGCCC   1099 Target Full Sequence	2.5	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537827.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   ||||*|*|*||||||||||||||| targets:22   AAAUAGAGAUUUCCAAACUAGCUC   45 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103625780 (LOC103625780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544094.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*|*||||||||||||||||*| targets:1305   AAAAUAGGGUUUCCAAACUAGCCC   1328 Target Full Sequence	2.5	PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA	NA	coding protein	psRNATarget
XM_020537826.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   ||||*|*|*||||||||||||||| targets:22   AAAUAGAGAUUUCCAAACUAGCUC   45 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103625780 (LOC103625780), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544055.1	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||||*|||||||||||||*| targets:1887   AAAAUGGGAUUUCCAAACUAGCCC   1910 Target Full Sequence	2.5	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662239.2	ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1   |||*||||*|||||||||||||*| targets:1907   AAAAUGGGAUUUCCAAACUAGCCC   1930 Target Full Sequence	2.5	PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA	NA	coding protein	psRNATarget