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BaseInfo

ncRNA ID novel_zma_miR5606
Species Zea mays
Class miRNA
Genome position Chr1:16364164-16364281 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 95 - GAGCUAGUUUGGAAACCCCAAUUU - 118
Stem-loop(if miRNA) --                        C                   CC  A    UUUA
  GAGCUAGUUUGGAAACCCCAAUUU CCACGGGAUUCUCAUUUUU  AA GGAA    G
  |||||||||||||||||||||||| |||||||||||||||||||  || ||||    U
  CUCGAUCAAACCUUUGGGGUUAAA GGUGCCCUAAGAGUAAAAA  UU CCUU    U
AU                        A                   -A  C    UUAU
Stem-loop sequence GAGCUAGUUUGGAAACCCCAAUUUCCCACGGGAUUCUCAUUUUUCCAAAGGAAUUUAGUUUAUUUUCCCUUAAAAAAUGAGAAUCCCGUGGAAAAUUGGGGUUUCCAAACUAGCUCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU951374.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||||||||||||||||||*|
targets:413   AAAAUGGGGUUUCCAAACUAGCCC   436

1.5 Zea mays clone 697858 mRNA sequence NA coding protein psRNATarget
BT088407.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||||*||||||||||||=||
targets:1102   AAAAUGGGAUUUCCAAACUAGUUC   1125

2.5 Zea mays full-length cDNA clone ZM_BFc0179M16 mRNA, complete cds NA coding protein psRNATarget
XM_020550081.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  =||||*|*||||||||||||||||
targets:2429   GAAUUUGAGUUUCCAAACUAGCUC   2452

2.0 PREDICTED: Zea mays uncharacterized LOC109944788 (LOC109944788), mRNA NA coding protein psRNATarget
XM_008676336.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  ==|||*|*||||||||||||||||
targets:4376   GGAUUUGAGUUUCCAAACUAGCUC   4399

2.0 PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008676333.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  ==|||*|*||||||||||||||||
targets:4390   GGAUUUGAGUUUCCAAACUAGCUC   4413

2.0 PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676335.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  ==|||*|*||||||||||||||||
targets:4403   GGAUUUGAGUUUCCAAACUAGCUC   4426

2.0 PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA NA coding protein psRNATarget
EU942844.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  ||*|||*||||||||||*||||||
targets:225   AAUUUGAGGUUUCCAAAGUAGCUC   248

2.5 Zea mays clone 1540330 mRNA sequence NA coding protein psRNATarget
XM_008652590.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||*|||||||||||||||*|
targets:971   AAAAUGAGGUUUCCAAACUAGCCC   994

2.5 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008652589.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||*|||||||||||||||*|
targets:998   AAAAUGAGGUUUCCAAACUAGCCC   1021

2.5 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X3, mRNA NA coding protein psRNATarget
BT034002.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||*|||||||||||||||*|
targets:1016   AAAAUGAGGUUUCCAAACUAGCCC   1039

2.5 Zea mays full-length cDNA clone ZM_BFc0044B05 mRNA, complete cds NA coding protein psRNATarget
NM_001137218.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||*|||||||||||||||*|
targets:1016   AAAAUGAGGUUUCCAAACUAGCCC   1039

2.5 Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), mRNA NA coding protein psRNATarget
XM_008652587.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||*|||||||||||||||*|
targets:1076   AAAAUGAGGUUUCCAAACUAGCCC   1099

2.5 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC100191793), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020537827.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  ||||*|*|*|||||||||||||||
targets:22   AAAUAGAGAUUUCCAAACUAGCUC   45

2.0 PREDICTED: Zea mays uncharacterized LOC103625780 (LOC103625780), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544094.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*|*||||||||||||||||*|
targets:1305   AAAAUAGGGUUUCCAAACUAGCCC   1328

2.5 PREDICTED: Zea mays 3-ketoacyl-CoA synthase 6 (LOC103638222), mRNA NA coding protein psRNATarget
XM_020537826.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  ||||*|*|*|||||||||||||||
targets:22   AAAUAGAGAUUUCCAAACUAGCUC   45

2.0 PREDICTED: Zea mays uncharacterized LOC103625780 (LOC103625780), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544055.1
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||||*|||||||||||||*|
targets:1887   AAAAUGGGAUUUCCAAACUAGCCC   1910

2.5 PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008662239.2
ncRNA:24   UUUAACCCCAAAGGUUUGAUCGAG   1
  |||*||||*|||||||||||||*|
targets:1907   AAAAUGGGAUUUCCAAACUAGCCC   1930

2.5 PREDICTED: Zea mays probable mitochondrial adenine nucleotide transporter BTL3 (LOC103639491), transcript variant X3, mRNA NA coding protein psRNATarget