ncRNA ID | novel_zma_miR5601 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:193736016-193736116 [+] |
Reference genome | RefGen_v4 |
Source | SRR1618883;SRR5105961 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUGAGAUGGACUGACCUAUGGGGG - 24 |
Stem-loop(if miRNA) |
--     AU  A   --A        GGG -     ----       -AG     G   AUGAG  GG CUG   CCUAUGGG   C AGAUC    CUCGUGU   GGACU G   |||||  || |||   ||||||||   | |||||    |||||||   ||||| G   UACUC  CC GGC   GGAUAUCC   G UCUAG    GAGUACG   CUUGG A CG     --  G   AGG        --A A     AAAU       AAA     G |
Stem-loop sequence | AUGAGAUGGACUGACCUAUGGGGGGCAGAUCCUCGUGUAGGGACUGGGAGGGUUCAAAGCAUGAGUAAAGAUCUAGACCUAUAGGGGACGGGCCCUCAUGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020549459.1 |
|
0.0 | PREDICTED: Zea mays uncharacterized LOC100192909 (pco096800), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020539261.1 |
|
2.5 | PREDICTED: Zea mays uncharacterized LOC103629447 (LOC103629447), mRNA | NA | coding protein | psRNATarget |