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BaseInfo

ncRNA ID novel_zma_miR5601
Species Zea mays
Class miRNA
Genome position Chr5:193736016-193736116 [+]
Reference genome RefGen_v4
Source SRR1618883;SRR5105961
Length 24
Mature sequence(if miRNA) 1 - AUGAGAUGGACUGACCUAUGGGGG - 24
Stem-loop(if miRNA) --     AU  A   --A        GGG -     ----       -AG     G
  AUGAG  GG CUG   CCUAUGGG   C AGAUC    CUCGUGU   GGACU G
  |||||  || |||   ||||||||   | |||||    |||||||   ||||| G
  UACUC  CC GGC   GGAUAUCC   G UCUAG    GAGUACG   CUUGG A
CG     --  G   AGG        --A A     AAAU       AAA     G
Stem-loop sequence AUGAGAUGGACUGACCUAUGGGGGGCAGAUCCUCGUGUAGGGACUGGGAGGGUUCAAAGCAUGAGUAAAGAUCUAGACCUAUAGGGGACGGGCCCUCAUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549459.1
ncRNA:24   GGGGGUAUCCAGUCAGGUAGAGUA   1
  =|||||||||||||||||||||||
targets:4774   UCCCCAUAGGUCAGUCCAUCUCAU   4797

0.0 PREDICTED: Zea mays uncharacterized LOC100192909 (pco096800), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539261.1
ncRNA:24   GGGGGUAUCCAGUCAGGUAGAGUA   1
  ||||=||||*||||||||||||=|
targets:373   CCCCUAUAGAUCAGUCCAUCUCGU   396

2.5 PREDICTED: Zea mays uncharacterized LOC103629447 (LOC103629447), mRNA NA coding protein psRNATarget