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BaseInfo

ncRNA ID	novel_zma_miR5599
Species	Zea mays
Class	miRNA
Genome position	Chr10:140224660-140224718 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	1 - UCCCUUGGAAAAAUGAAAAUCCCA - 24
Stem-loop(if miRNA)	--             C          AUG   GGAUUUUUAUUUU CCAAGGGAAA   A   ||||||||||||| ||||||||||   A   CCUAAAAGUAAAA GGUUCCCUUU   C AC             A          AAU
Stem-loop sequence	GGAUUUUUAUUUUCCCAAGGGAAAAUGAACUAAUUUCCCUUGGAAAAAUGAAAAUCCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544941.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||||||||||||||*|||||||| targets:1578   UGGGAUUUUCAUUUUCCCAAGGGA   1601 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544939.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||||||||||||||*|||||||| targets:1492   UGGGAUUUUCAUUUUCCCAAGGGA   1515 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544940.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||||||||||||||*|||||||| targets:1449   UGGGAUUUUCAUUUUCCCAAGGGA   1472 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544942.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||||||||||||||*|||||||| targets:1448   UGGGAUUUUCAUUUUCCCAAGGGA   1471 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020544943.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||||||||||||||*|||||||| targets:1405   UGGGAUUUUCAUUUUCCCAAGGGA   1428 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273625 (IDP475), transcript variant X5, mRNA	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   ||*||||||||||||||||||||| targets:709   UGAGAUUUUCAUUUUUCCAAGGGA   732 Target Full Sequence	0.0	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
EU960273.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   ||*||||||||||||||||||||| targets:709   UGAGAUUUUCAUUUUUCCAAGGGA   732 Target Full Sequence	0.0	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ078226.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **|||||||||||||||||||||| targets:202   AUGGAUUUUCAUUUUUCCAAGGGA   225 Target Full Sequence	0.0	TSA: Zea mays contig13865, mRNA sequence	NA	coding protein	psRNATarget
AY108137.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **|||||||||||||||||||||| targets:216   AUGGAUUUUCAUUUUUCCAAGGGA   239 Target Full Sequence	0.0	Zea mays PCO128089 mRNA sequence	NA	coding protein	psRNATarget
NM_001196460.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||||||||||||||||*|||||| targets:1383   AGGGAUUUUCAUUUUUCAAAGGGA   1406 Target Full Sequence	1.5	Zea mays Mosaic virus helicase domain-binding protein (LOC100501804), mRNA	NA	coding protein	psRNATarget
BT086269.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||||||||||||||||*|||||| targets:1383   AGGGAUUUUCAUUUUUCAAAGGGA   1406 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0140P03 mRNA, complete cds	NA	coding protein	psRNATarget
EU973119.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||||||||||||||||*|||||| targets:1381   AGGGAUUUUCAUUUUUCAAAGGGA   1404 Target Full Sequence	1.5	Zea mays clone 393646 mRNA sequence	NA	coding protein	psRNATarget
EU950786.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||||||||||||||*|||||||| targets:315   AGGGAUUUUCAUUUUCCCAAGGGA   338 Target Full Sequence	1.5	Zea mays clone 622889 mRNA sequence	NA	coding protein	psRNATarget
BT063756.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|||||||||=||||*|||||||| targets:1616   AGGGAUUUUCGUUUUCCCAAGGGA   1639 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0104A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154209.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||||||||=|||||||||||*|| targets:766   CGGGAUUUUUAUUUUUCCAAGAGA   789 Target Full Sequence	2.5	Zea mays phospholipid hydroperoxide glutathione peroxidase (LOC100281291), mRNA	NA	coding protein	psRNATarget
EU956246.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||||||||=|||||||||||*|| targets:766   CGGGAUUUUUAUUUUUCCAAGAGA   789 Target Full Sequence	2.5	Zea mays clone 1559557 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658839.2	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   ||*||||||||*|||||||||||| targets:1163   UGUGAUUUUCAAUUUUCCAAGGGA   1186 Target Full Sequence	1.5	PREDICTED: Zea mays protein STRICTOSIDINE SYNTHASE-LIKE 10 (LOC103636496), mRNA	NA	coding protein	psRNATarget
XM_020545615.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020545618.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020545620.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020545606.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545616.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020545607.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545619.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020545609.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545617.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020545608.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545610.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   **||||||||||||||||||*||| targets:261   AAGGAUUUUCAUUUUUCCAAUGGA   284 Target Full Sequence	1.5	PREDICTED: Zea mays filament-like plant protein 7 (LOC103642994), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT085046.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   ***||||||=||||||=||||||| targets:1789   AAAGAUUUUUAUUUUUUCAAGGGA   1812 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0232B17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538680.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*|=||||=||||||=||||||| targets:1872   AGUGGUUUUUAUUUUUUCAAGGGA   1895 Target Full Sequence	2.5	PREDICTED: Zea mays protein trichome birefringence-like 21 (LOC109940003), mRNA	NA	coding protein	psRNATarget
BT085232.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*|||||||||||||||||||*| targets:1884   AGAGAUUUUCAUUUUUCCAAGGAA   1907 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0337P12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680397.2	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|||*|||||||||||||||||*| targets:1625   GGGGUUUUUCAUUUUUCCAAGGAA   1648 Target Full Sequence	1.5	PREDICTED: Zea mays exocyst complex component EXO70A1 (LOC103653505), mRNA	NA	coding protein	psRNATarget
BT016725.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|||*||||||||||||||*|||| targets:881   AGGGUUUUUCAUUUUUCCAUGGGA   904 Target Full Sequence	1.5	Zea mays clone Contig558 mRNA sequence	NA	coding protein	psRNATarget
JB163537.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*||||||=||||||||||||*| targets:27   AGUGAUUUUUAUUUUUCCAAGGAA   50 Target Full Sequence	2.5	Sequence 1201 from Patent EP2559767	NA	coding protein	psRNATarget
HI403076.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*||||||=||||||||||||*| targets:27   AGUGAUUUUUAUUUUUCCAAGGAA   50 Target Full Sequence	2.5	Sequence 1201 from Patent EP2074227	NA	coding protein	psRNATarget
HI403378.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*||||||=||||||||||||*| targets:27   AGUGAUUUUUAUUUUUCCAAGGAA   50 Target Full Sequence	2.5	Sequence 1503 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235508.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*||||||=||||||||||||*| targets:27   AGUGAUUUUUAUUUUUCCAAGGAA   50 Target Full Sequence	2.5	Sequence 1503 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235206.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*||||||=||||||||||||*| targets:27   AGUGAUUUUUAUUUUUCCAAGGAA   50 Target Full Sequence	2.5	Sequence 1201 from Patent EP2985353	NA	coding protein	psRNATarget
JB163839.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*||||||=||||||||||||*| targets:27   AGUGAUUUUUAUUUUUCCAAGGAA   50 Target Full Sequence	2.5	Sequence 1503 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008651269.2	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||*|**||||||||||||||||| targets:3945   UGGUAACUUCAUUUUUCCAAGGGA   3968 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103630192), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651270.2	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||*|**||||||||||||||||| targets:3902   UGGUAACUUCAUUUUUCCAAGGGA   3925 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103630192), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ069390.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   |||*|**||=|||||||||||||| targets:559   UGGAAACUUUAUUUUUCCAAGGGA   582 Target Full Sequence	3.0	TSA: Zea mays contig05026, mRNA sequence	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *|*|||||*||||||*|||||||| targets:771   AGAGAUUUCCAUUUUCCCAAGGGA   794 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ095113.1	ncRNA:24   ACCCUAAAAGUAAAAAGGUUCCCU   1   *||*||||*|||||||*||||||| targets:88   AGGAAUUUCCAUUUUUACAAGGGA   111 Target Full Sequence	2.5	TSA: Zea mays contig30766, mRNA sequence	NA	coding protein	psRNATarget