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BaseInfo

ncRNA ID	novel_zma_miR5598
Species	Zea mays
Class	miRNA
Genome position	Chr1:103639112-103639235 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647387;SRR2647388;SRR2647389
Length	24
Mature sequence(if miRNA)	1 - AUAUGUGUGAGACUUGAUCUCAGC - 24
Stem-loop(if miRNA)	---U      UU    -       AUG   UUAUUUAGCUAUUUUGUACAGAACUCCUAUUAUA     GGAUCG  GUCU GCAUAUG   UAA                                  U     ||||||  |||| |||||||   |||                                  A     UCUAGU  CAGA UGUGUAU   CGA                                  G CGAC      -U    G       --A   CUGAGUACCAUGUCUUUGUUUACAGUGUAGAAAU
Stem-loop sequence	UGGAUCGUUGUCUGCAUAUGAUGUAAUUAUUUAGCUAUUUUGUACAGAACUCCUAUUAUAUAGUAAAGAUGUGACAUUUGUUUCUGUACCAUGAGUCAGCAUAUGUGUGAGACUUGAUCUCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ105285.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||||||||| targets:55   GCUGGGACCAAGUCUCACACAUAU   78 Target Full Sequence	1.0	TSA: Zea mays contig40942, mRNA sequence	NA	coding protein	psRNATarget
EZ108461.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||||||||| targets:46   GCUGGGACCAAGUCUCACACAUAU   69 Target Full Sequence	1.0	TSA: Zea mays contig44120, mRNA sequence	NA	coding protein	psRNATarget
HI409359.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||||||||| targets:15   GCUGGGACCAAGUCUCACACAUAU   38 Target Full Sequence	1.0	Sequence 7484 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241489.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||||||||| targets:15   GCUGGGACCAAGUCUCACACAUAU   38 Target Full Sequence	1.0	Sequence 7484 from Patent EP2985353	NA	coding protein	psRNATarget
JB169820.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||||||||| targets:15   GCUGGGACCAAGUCUCACACAUAU   38 Target Full Sequence	1.0	Sequence 7484 from Patent EP2559767	NA	coding protein	psRNATarget
EZ111999.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||||||*|||||||||||| targets:101   GCUGGGAUCAAAUCUCACACAUAU   124 Target Full Sequence	1.5	TSA: Zea mays contig47660, mRNA sequence	NA	coding protein	psRNATarget
EU949517.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   |=||*||||||||||||||||||| targets:704   GUUGCGAUCAAGUCUCACACAUAU   727 Target Full Sequence	0.0	Zea mays clone 422031 mRNA sequence	NA	coding protein	psRNATarget
EU974341.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   |||*=||||||||||||||||||| targets:1024   GCUAGGAUCAAGUCUCACACAUAU   1047 Target Full Sequence	0.0	Zea mays clone 446742 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU940868.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||||||||| targets:665   GCUGGGACCAAGUCUCACACAUAU   688 Target Full Sequence	1.0	Zea mays clone 1165273 mRNA sequence	NA	coding protein	psRNATarget
XM_008680517.2	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   |=||*||||||||||||||||||| targets:11041   GUUGCGAUCAAGUCUCACACAUAU   11064 Target Full Sequence	0.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA	NA	coding protein	psRNATarget
XM_008680517.2	ncRNA:24   CGACUCUAGUUCAGAGUGUGUA-UA   1   |||*=|||||||||||||||||-|| targets:8011   GCUAGGAUCAAGUCUCACACAUGAU   8035 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA	NA	coding protein	psRNATarget
EU941463.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*|||||||||=|||||| targets:596   GCUGGGACCAAGUCUCAUACAUAU   619 Target Full Sequence	2.5	Zea mays clone 1454284 mRNA sequence	NA	coding protein	psRNATarget
XM_008667210.2	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||||=||*||||||||||||||=| targets:736   GCUGGGACCAAGUCUCACACAUGU   759 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103644022 (LOC103644022), mRNA	NA	coding protein	psRNATarget
XM_008667514.2	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   *||*=||||||||||||||||||| targets:1454   ACUAGGAUCAAGUCUCACACAUAU   1477 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103644312 (LOC103644312), mRNA	NA	coding protein	psRNATarget
XM_008658973.2	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   *|||||||=||||||||||||*|| targets:1488   UCUGAGAUUAAGUCUCACACACAU   1511 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g56310 (LOC103636618), mRNA	NA	coding protein	psRNATarget
XM_020549976.1	ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1   ||*|-||||||||=|||||||||| targets:5231   GCAG-GAUCAAGUUUCACACAUAU   5253 Target Full Sequence	1.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100501588), transcript variant X1, mRNA	NA	coding protein	psRNATarget