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BaseInfo

ncRNA ID novel_zma_miR5598
Species Zea mays
Class miRNA
Genome position Chr1:103639112-103639235 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647387;SRR2647388;SRR2647389
Length 24
Mature sequence(if miRNA) 1 - AUAUGUGUGAGACUUGAUCUCAGC - 24
Stem-loop(if miRNA) ---U      UU    -       AUG   UUAUUUAGCUAUUUUGUACAGAACUCCUAUUAUA
    GGAUCG  GUCU GCAUAUG   UAA                                  U
    ||||||  |||| |||||||   |||                                  A
    UCUAGU  CAGA UGUGUAU   CGA                                  G
CGAC      -U    G       --A   CUGAGUACCAUGUCUUUGUUUACAGUGUAGAAAU
Stem-loop sequence UGGAUCGUUGUCUGCAUAUGAUGUAAUUAUUUAGCUAUUUUGUACAGAACUCCUAUUAUAUAGUAAAGAUGUGACAUUUGUUUCUGUACCAUGAGUCAGCAUAUGUGUGAGACUUGAUCUCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ105285.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||||
targets:55   GCUGGGACCAAGUCUCACACAUAU   78

1.0 TSA: Zea mays contig40942, mRNA sequence NA coding protein psRNATarget
EZ108461.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||||
targets:46   GCUGGGACCAAGUCUCACACAUAU   69

1.0 TSA: Zea mays contig44120, mRNA sequence NA coding protein psRNATarget
HI409359.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||||
targets:15   GCUGGGACCAAGUCUCACACAUAU   38

1.0 Sequence 7484 from Patent EP2074227 NA coding protein psRNATarget
LQ241489.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||||
targets:15   GCUGGGACCAAGUCUCACACAUAU   38

1.0 Sequence 7484 from Patent EP2985353 NA coding protein psRNATarget
JB169820.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||||
targets:15   GCUGGGACCAAGUCUCACACAUAU   38

1.0 Sequence 7484 from Patent EP2559767 NA coding protein psRNATarget
EZ111999.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||||||*||||||||||||
targets:101   GCUGGGAUCAAAUCUCACACAUAU   124

1.5 TSA: Zea mays contig47660, mRNA sequence NA coding protein psRNATarget
EU949517.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  |=||*|||||||||||||||||||
targets:704   GUUGCGAUCAAGUCUCACACAUAU   727

0.0 Zea mays clone 422031 mRNA sequence NA coding protein psRNATarget
EU974341.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  |||*=|||||||||||||||||||
targets:1024   GCUAGGAUCAAGUCUCACACAUAU   1047

0.0 Zea mays clone 446742 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU940868.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||||
targets:665   GCUGGGACCAAGUCUCACACAUAU   688

1.0 Zea mays clone 1165273 mRNA sequence NA coding protein psRNATarget
XM_008680517.2
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  |=||*|||||||||||||||||||
targets:11041   GUUGCGAUCAAGUCUCACACAUAU   11064

0.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA NA coding protein psRNATarget
XM_008680517.2
ncRNA:24   CGACUCUAGUUCAGAGUGUGUA-UA   1
  |||*=|||||||||||||||||-||
targets:8011   GCUAGGAUCAAGUCUCACACAUGAU   8035

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g65560 (LOC103653689), mRNA NA coding protein psRNATarget
EU941463.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*|||||||||=||||||
targets:596   GCUGGGACCAAGUCUCAUACAUAU   619

2.5 Zea mays clone 1454284 mRNA sequence NA coding protein psRNATarget
XM_008667210.2
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||||=||*||||||||||||||=|
targets:736   GCUGGGACCAAGUCUCACACAUGU   759

2.5 PREDICTED: Zea mays uncharacterized LOC103644022 (LOC103644022), mRNA NA coding protein psRNATarget
XM_008667514.2
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  *||*=|||||||||||||||||||
targets:1454   ACUAGGAUCAAGUCUCACACAUAU   1477

0.0 PREDICTED: Zea mays uncharacterized LOC103644312 (LOC103644312), mRNA NA coding protein psRNATarget
XM_008658973.2
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  *|||||||=||||||||||||*||
targets:1488   UCUGAGAUUAAGUCUCACACACAU   1511

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g56310 (LOC103636618), mRNA NA coding protein psRNATarget
XM_020549976.1
ncRNA:24   CGACUCUAGUUCAGAGUGUGUAUA   1
  ||*|-||||||||=||||||||||
targets:5231   GCAG-GAUCAAGUUUCACACAUAU   5253

1.5 PREDICTED: Zea mays Pentatricopeptide repeat-containing protein (LOC100501588), transcript variant X1, mRNA NA coding protein psRNATarget