Search result

BaseInfo

ncRNA ID	novel_zma_miR5597
Species	Zea mays
Class	miRNA
Genome position	Chr1:135199434-135199544 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	1 - CUGCUAGAGUAAGAUAAAUUUGGC - 24
Stem-loop(if miRNA)	--A                             ---         GGU   UUUG   UA    AAAUUUAUCUUACUCUAGCAGUUAAAAAA   ACAAAUUUU   GCA    AAC  U    |||||||||||||||||||||||||||||   |||||||||   |||    |||  U    UUUAAAUAGAAUGAGAUCGUCAAUUUUUU   UGUUUAAAG   UGU    UUG  A CGG                             UCU         -AU   ----   UC
Stem-loop sequence	AAAAUUUAUCUUACUCUAGCAGUUAAAAAAACAAAUUUUGGUGCAUUUGAACUAUUACUGUUUGUUAGAAAUUUGUUCUUUUUUUAACUGCUAGAGUAAGAUAAAUUUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538560.1	ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1   |=|||||||||||||=|||||||| targets:2894   GUCAAAUUUAUCUUAUUCUAGCAG   2917 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538559.1	ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1   |=|||||||||||||=|||||||| targets:2894   GUCAAAUUUAUCUUAUUCUAGCAG   2917 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647567.2	ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1   |=|||||||||||||=|||||||| targets:2776   GUCAAAUUUAUCUUAUUCUAGCAG   2799 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538561.1	ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1   |=|||||||||||||=|||||||| targets:2894   GUCAAAUUUAUCUUAUUCUAGCAG   2917 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X4, mRNA	NA	coding protein	psRNATarget