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BaseInfo

ncRNA ID novel_zma_miR5597
Species Zea mays
Class miRNA
Genome position Chr1:135199434-135199544 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 1 - CUGCUAGAGUAAGAUAAAUUUGGC - 24
Stem-loop(if miRNA) --A                             ---         GGU   UUUG   UA
   AAAUUUAUCUUACUCUAGCAGUUAAAAAA   ACAAAUUUU   GCA    AAC  U
   |||||||||||||||||||||||||||||   |||||||||   |||    |||  U
   UUUAAAUAGAAUGAGAUCGUCAAUUUUUU   UGUUUAAAG   UGU    UUG  A
CGG                             UCU         -AU   ----   UC
Stem-loop sequence AAAAUUUAUCUUACUCUAGCAGUUAAAAAAACAAAUUUUGGUGCAUUUGAACUAUUACUGUUUGUUAGAAAUUUGUUCUUUUUUUAACUGCUAGAGUAAGAUAAAUUUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538560.1
ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1
  |=|||||||||||||=||||||||
targets:2894   GUCAAAUUUAUCUUAUUCUAGCAG   2917

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538559.1
ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1
  |=|||||||||||||=||||||||
targets:2894   GUCAAAUUUAUCUUAUUCUAGCAG   2917

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647567.2
ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1
  |=|||||||||||||=||||||||
targets:2776   GUCAAAUUUAUCUUAUUCUAGCAG   2799

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538561.1
ncRNA:24   CGGUUUAAAUAGAAUGAGAUCGUC   1
  |=|||||||||||||=||||||||
targets:2894   GUCAAAUUUAUCUUAUUCUAGCAG   2917

1.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103627279), transcript variant X4, mRNA NA coding protein psRNATarget