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BaseInfo

ncRNA ID novel_zma_miR5595
Species Zea mays
Class miRNA
Genome position Chr1:163239128-163239215 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467;SRR1583942;SRR1583943
Length 24
Mature sequence(if miRNA) 1 - GACUAGGAGGAGAUUUAAUCCCCU - 24
Stem-loop(if miRNA) ----GU       C           UUUU   C       A  UU
      UUAAAUC CCUUCUAGUUA    UGA UAGGAGG GG  U
      ||||||| |||||||||||    ||| ||||||| ||  A
      AAUUUAG GGAGGAUCAGU    AUU AUCUUCC CC  A
UCCCCU       A           UUUU   A       -  UA
Stem-loop sequence GUUUAAAUCCCCUUCUAGUUAUUUUUGACUAGGAGGAGGUUUAAAUCCCCUUCUAAUUAUUUUUGACUAGGAGGAGAUUUAAUCCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069231.2
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |||*|||||||||||=||||||||
targets:1009   AGGAGAUUAAAUCUCUUCCUAGUC   1032

1.5 Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds NA coding protein psRNATarget
EU963775.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:186   AAGGGAUUAAAUCUCCUCCUAUUC   209

1.5 Zea mays clone 272562 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU961196.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:328   AAGGGAUUAAAUCUCCUCCUAUUC   351

1.5 Zea mays clone 233383 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU964415.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:712   AAGGGAUUAAAUCUCCUCCUAUUC   735

1.5 Zea mays clone 278711 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001245881.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:712   AAGGGAUUAAAUCUCCUCCUAUUC   735

1.5 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT069064.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:775   AAGGGAUUAAAUCUCCUCCUAUUC   798

1.5 Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds NA coding protein psRNATarget
BT065224.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:758   AAGGGAUUAAAUCUCCUCCUAUUC   781

1.5 Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds NA coding protein psRNATarget
NM_001150473.2
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:813   AAGGGAUUAAAUCUCCUCCUAUUC   836

1.5 Zea mays hypothetical protein (LOC100276749), mRNA NA coding protein psRNATarget
BT062705.1
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:813   AAGGGAUUAAAUCUCCUCCUAUUC   836

1.5 Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds NA coding protein psRNATarget
XM_008678753.2
ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1
  |*|||||||||||||||||||*||
targets:858   AAGGGAUUAAAUCUCCUCCUAUUC   881

1.5 PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA NA coding protein psRNATarget