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BaseInfo

ncRNA ID	novel_zma_miR5595
Species	Zea mays
Class	miRNA
Genome position	Chr1:163239128-163239215 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467;SRR1583942;SRR1583943
Length	24
Mature sequence(if miRNA)	1 - GACUAGGAGGAGAUUUAAUCCCCU - 24
Stem-loop(if miRNA)	----GU       C           UUUU   C       A  UU       UUAAAUC CCUUCUAGUUA    UGA UAGGAGG GG  U       ||||||| |||||||||||    ||| ||||||| ||  A       AAUUUAG GGAGGAUCAGU    AUU AUCUUCC CC  A UCCCCU       A           UUUU   A       -  UA
Stem-loop sequence	GUUUAAAUCCCCUUCUAGUUAUUUUUGACUAGGAGGAGGUUUAAAUCCCCUUCUAAUUAUUUUUGACUAGGAGGAGAUUUAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069231.2	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |||*|||||||||||=|||||||| targets:1009   AGGAGAUUAAAUCUCUUCCUAGUC   1032 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
EU963775.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:186   AAGGGAUUAAAUCUCCUCCUAUUC   209 Target Full Sequence	1.5	Zea mays clone 272562 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU961196.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:328   AAGGGAUUAAAUCUCCUCCUAUUC   351 Target Full Sequence	1.5	Zea mays clone 233383 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964415.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:712   AAGGGAUUAAAUCUCCUCCUAUUC   735 Target Full Sequence	1.5	Zea mays clone 278711 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001245881.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:712   AAGGGAUUAAAUCUCCUCCUAUUC   735 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
BT069064.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:775   AAGGGAUUAAAUCUCCUCCUAUUC   798 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0160O17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065224.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:758   AAGGGAUUAAAUCUCCUCCUAUUC   781 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0046E21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150473.2	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:813   AAGGGAUUAAAUCUCCUCCUAUUC   836 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100276749), mRNA	NA	coding protein	psRNATarget
BT062705.1	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:813   AAGGGAUUAAAUCUCCUCCUAUUC   836 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0335N06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678753.2	ncRNA:24   UCCCCUAAUUUAGAGGAGGAUCAG   1   |*|||||||||||||||||||*|| targets:858   AAGGGAUUAAAUCUCCUCCUAUUC   881 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100276749), transcript variant X1, mRNA	NA	coding protein	psRNATarget