Search result

BaseInfo

ncRNA ID	novel_zma_miR5594
Species	Zea mays
Class	miRNA
Genome position	Chr1:229134628-229134744 [-]
Reference genome	RefGen_v4
Source	SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388
Length	24
Mature sequence(if miRNA)	94 - CAAACUACACUAUAUAAACAGUGU - 117
Stem-loop(if miRNA)	--      A    A                            -CAUGUUUUA    G U   CAAACU CACU UAUAAACAGUGUAGUUUAUAGUGCAAAA          CGUG C A   |||||| |||| ||||||||||||||||||||||||||||          |||| | U   GUUUGA GUGA AUAUUUGUCACGUCAGAUGUCACGUUUU          GCAC G A AA      G    G                            AUCUGGUCUA    - U
Stem-loop sequence	CAAACUACACUAUAUAAACAGUGUAGUUUAUAGUGCAAAACAUGUUUUACGUGGCUAUAUGCACGAUCUGGUCUAUUUUGCACUGUAGACUGCACUGUUUAUAGAGUGGAGUUUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943186.1	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   |=||||||||||||*||||||||| targets:2250   AUACUGUUUAUAUAAUGUAGUUUG   2273 Target Full Sequence	1.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
XM_008657211.2	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   ||||||||||*||*|||||||||| targets:3197   ACACUGUUUACAUUGUGUAGUUUG   3220 Target Full Sequence	2.5	PREDICTED: Zea mays putative GTP diphosphokinase RSH1, chloroplastic (LOC103634629), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657215.2	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   ||||||||||*||*|||||||||| targets:3433   ACACUGUUUACAUUGUGUAGUUUG   3456 Target Full Sequence	2.5	PREDICTED: Zea mays putative GTP diphosphokinase RSH1, chloroplastic (LOC103634629), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT017741.1	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   *||||||||*|||||||*|||||| targets:1186   UCACUGUUUCUAUAGUGAAGUUUG   1209 Target Full Sequence	2.5	Zea mays clone EL01N0449D03.c mRNA sequence	NA	coding protein	psRNATarget
XM_008658353.2	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   *||||||||*|||||||*|||||| targets:7974   UCACUGUUUCUAUAGUGAAGUUUG   7997 Target Full Sequence	2.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (LOC103635990), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658352.2	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   *||||||||*|||||||*|||||| targets:8131   UCACUGUUUCUAUAGUGAAGUUUG   8154 Target Full Sequence	2.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (LOC103635990), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ092417.1	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   ==|||*|||||||||||*|||||| targets:37   GUACUAUUUAUAUAGUGGAGUUUG   60 Target Full Sequence	2.5	TSA: Zea mays contig28066, mRNA sequence	NA	coding protein	psRNATarget
XM_020542577.1	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   ||||*|||||*|*||||||||||| targets:86   ACACGGUUUAAAGAGUGUAGUUUG   109 Target Full Sequence	2.5	PREDICTED: Zea mays ERBB-3 BINDING PROTEIN 1-like (LOC103635752), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143225.1	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   =|*=|||||||||||||*|||||* targets:1551   GCUUUGUUUAUAUAGUGGAGUUUA   1574 Target Full Sequence	2.5	Zea mays Microsomal glutathione s-transferase (IDP340), mRNA	NA	coding protein	psRNATarget
BT037419.1	ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1   =|*=|||||||||||||*|||||* targets:1551   GCUUUGUUUAUAUAGUGGAGUUUA   1574 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0168I20 mRNA, complete cds	NA	coding protein	psRNATarget