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BaseInfo

ncRNA ID novel_zma_miR5594
Species Zea mays
Class miRNA
Genome position Chr1:229134628-229134744 [-]
Reference genome RefGen_v4
Source SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388
Length 24
Mature sequence(if miRNA) 94 - CAAACUACACUAUAUAAACAGUGU - 117
Stem-loop(if miRNA) --      A    A                            -CAUGUUUUA    G U
  CAAACU CACU UAUAAACAGUGUAGUUUAUAGUGCAAAA          CGUG C A
  |||||| |||| ||||||||||||||||||||||||||||          |||| | U
  GUUUGA GUGA AUAUUUGUCACGUCAGAUGUCACGUUUU          GCAC G A
AA      G    G                            AUCUGGUCUA    - U
Stem-loop sequence CAAACUACACUAUAUAAACAGUGUAGUUUAUAGUGCAAAACAUGUUUUACGUGGCUAUAUGCACGAUCUGGUCUAUUUUGCACUGUAGACUGCACUGUUUAUAGAGUGGAGUUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943186.1
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  |=||||||||||||*|||||||||
targets:2250   AUACUGUUUAUAUAAUGUAGUUUG   2273

1.5 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget
XM_008657211.2
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  ||||||||||*||*||||||||||
targets:3197   ACACUGUUUACAUUGUGUAGUUUG   3220

2.5 PREDICTED: Zea mays putative GTP diphosphokinase RSH1, chloroplastic (LOC103634629), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657215.2
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  ||||||||||*||*||||||||||
targets:3433   ACACUGUUUACAUUGUGUAGUUUG   3456

2.5 PREDICTED: Zea mays putative GTP diphosphokinase RSH1, chloroplastic (LOC103634629), transcript variant X2, mRNA NA coding protein psRNATarget
BT017741.1
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  *||||||||*|||||||*||||||
targets:1186   UCACUGUUUCUAUAGUGAAGUUUG   1209

2.5 Zea mays clone EL01N0449D03.c mRNA sequence NA coding protein psRNATarget
XM_008658353.2
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  *||||||||*|||||||*||||||
targets:7974   UCACUGUUUCUAUAGUGAAGUUUG   7997

2.5 PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (LOC103635990), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658352.2
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  *||||||||*|||||||*||||||
targets:8131   UCACUGUUUCUAUAGUGAAGUUUG   8154

2.5 PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (LOC103635990), transcript variant X1, mRNA NA coding protein psRNATarget
EZ092417.1
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  ==|||*|||||||||||*||||||
targets:37   GUACUAUUUAUAUAGUGGAGUUUG   60

2.5 TSA: Zea mays contig28066, mRNA sequence NA coding protein psRNATarget
XM_020542577.1
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  ||||*|||||*|*|||||||||||
targets:86   ACACGGUUUAAAGAGUGUAGUUUG   109

2.5 PREDICTED: Zea mays ERBB-3 BINDING PROTEIN 1-like (LOC103635752), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001143225.1
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  =|*=|||||||||||||*|||||*
targets:1551   GCUUUGUUUAUAUAGUGGAGUUUA   1574

2.5 Zea mays Microsomal glutathione s-transferase (IDP340), mRNA NA coding protein psRNATarget
BT037419.1
ncRNA:24   UGUGACAAAUAUAUCACAUCAAAC   1
  =|*=|||||||||||||*|||||*
targets:1551   GCUUUGUUUAUAUAGUGGAGUUUA   1574

2.5 Zea mays full-length cDNA clone ZM_BFb0168I20 mRNA, complete cds NA coding protein psRNATarget