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BaseInfo

ncRNA ID novel_zma_miR5592
Species Zea mays
Class miRNA
Genome position Chr5:185444298-185444434 [+]
Reference genome RefGen_v4
Source SRR1618883
Length 24
Mature sequence(if miRNA) 114 - UUGGGGUAGAACCGAACAAGGCCU - 137
Stem-loop(if miRNA) -   -          -AU UU                GA         UACGGAUUGGA    A   UG -   A
 GGC UUGUUCGGUU   U  CAAUCCAUAUGGAUUG  GGGGAUUGA           GGGG UUU  A CUU C
 ||| ||||||||||   |  ||||||||||||||||  |||||||||           |||| |||  | |||
 CCG AACAAGCCAA   G  GUUAGGUAUACCUAAC  CCCCUAACU           CCCC AAA  U GGG U
U   G          GAU GG                UC         -----------    C   GU A   A
Stem-loop sequence GGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACUAGGGAUUGAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ061352.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:106   AGGGCUUGUUCGGUUCUACCCCAA   129

0.0 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
EU972046.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:692   AGGGCUUGUUCGGUUCUACCCCAA   715

0.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:834   AGGGCUUGUUCGGUUCUACCCCAA   857

0.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959053.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:780   AGGGCUUGUUCGGUUCUACCCCAA   803

0.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:780   AGGGCUUGUUCGGUUCUACCCCAA   803

0.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:781   AGGGCUUGUUCGGUUCUACCCCAA   804

0.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU953075.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:917   AGGGCUUGUUCGGUUCUACCCCAA   940

0.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:853   AGGGCUUGUUCGGUUCUACCCCAA   876

0.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:1898   AGGGCUUGUUCGGUUCUACCCCAA   1921

0.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||||||
targets:1898   AGGGCUUGUUCGGUUCUACCCCAA   1921

0.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  =||*||||||||||||||||||||
targets:353   GGGGCUUGUUCGGUUCUACCCCAA   376

0.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
BT064935.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||||||=||||
targets:746   AGGGCUUGUUCGGUUCUACUCCAA   769

1.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
EU959055.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||*||||||||
targets:782   AGGGCUUGUUCGGUUYUACCCCAA   805

1.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU961636.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  ||||-|||||||||||||||||||
targets:1038   AGGC-UUGUUCGGUUCUACCCCAA   1060

0.0 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
EU965203.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||||||||||=
targets:797   AGGGCUUGUUCGGUUCUACCCCAG   820

1.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||||||||||=
targets:797   AGGGCUUGUUCGGUUCUACCCCAG   820

1.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||||||||||=|||
targets:1538   AGGGCUUGUUCGGUUCUACCUCAA   1561

1.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  *||*||||||||||||||||||||
targets:879   CGGGCUUGUUCGGUUCUACCCCAA   902

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  *||*||||||||||||||||||||
targets:1671   CGGGCUUGUUCGGUUCUACCCCAA   1694

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||=|*||||||||||||||=|||
targets:209   AGGUCAUGUUCGGUUCUACCUCAA   232

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  *|||-|||||||||||||||||||
targets:886   UGGC-UUGUUCGGUUCUACCCCAA   908

0.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||*|||||||||||
targets:847   AGGGCUUGUUCGAUUCUACCCCAA   870

1.5 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
BT064472.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||*||||||||
targets:1339   AGGGCUUGUUCGGUUAUACCCCAA   1362

1.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||*||||||||
targets:1383   AGGGCUUGUUCGGUUAUACCCCAA   1406

1.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||*||||||||
targets:1401   AGGGCUUGUUCGGUUAUACCCCAA   1424

1.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||*||||||||
targets:1415   AGGGCUUGUUCGGUUAUACCCCAA   1438

1.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*|||||||||||*||||||||
targets:1415   AGGGCUUGUUCGGUUAUACCCCAA   1438

1.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||*||||||||*|||||||||||
targets:3028   AGGGCUUGUUCGUUUCUACCCCAA   3051

1.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
EZ081763.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  |||=|*||||||||||||||*|||
targets:43   AGGUCAUGUUCGGUUCUACCACAA   66

2.5 TSA: Zea mays contig17404, mRNA sequence NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  =||*|||||||||||*||||||||
targets:1606   GGGGCUUGUUCGGUUAUACCCCAA   1629

1.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
JB167104.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  ||--||||||||*|||||||||||
targets:8   AG--CUUGUUCGUUUCUACCCCAA   29

1.5 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
HI406643.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  ||--||||||||*|||||||||||
targets:8   AG--CUUGUUCGUUUCUACCCCAA   29

1.5 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
LQ238773.1
ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1
  ||--||||||||*|||||||||||
targets:8   AG--CUUGUUCGUUUCUACCCCAA   29

1.5 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
XM_020548481.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1273   AAGCGUUUGUUCGGUUCUUCCCCAA   1297

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020548480.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1303   AAGCGUUUGUUCGGUUCUUCCCCAA   1327

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020548478.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1367   AAGCGUUUGUUCGGUUCUUCCCCAA   1391

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020548482.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1377   AAGCGUUUGUUCGGUUCUUCCCCAA   1401

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020548476.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1380   AAGCGUUUGUUCGGUUCUUCCCCAA   1404

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020548479.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1387   AAGCGUUUGUUCGGUUCUUCCCCAA   1411

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020548475.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1397   AAGCGUUUGUUCGGUUCUUCCCCAA   1421

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548477.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1438   AAGCGUUUGUUCGGUUCUUCCCCAA   1462

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020548474.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1474   AAGCGUUUGUUCGGUUCUUCCCCAA   1498

1.5 PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X1, mRNA NA coding protein psRNATarget
EU956672.1
ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1
  |*||-=||||||||||||*||||||
targets:1681   AAGCGUUUGUUCGGUUCUUCCCCAA   1705

1.5 Zea mays clone 1570344 mRNA sequence NA coding protein psRNATarget