Search result

BaseInfo

ncRNA ID	novel_zma_miR5592
Species	Zea mays
Class	miRNA
Genome position	Chr5:185444298-185444434 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	114 - UUGGGGUAGAACCGAACAAGGCCU - 137
Stem-loop(if miRNA)	-   -          -AU UU                GA         UACGGAUUGGA    A   UG -   A  GGC UUGUUCGGUU   U  CAAUCCAUAUGGAUUG  GGGGAUUGA           GGGG UUU  A CUU C  ||| ||||||||||   |  ||||||||||||||||  |||||||||           |||| |||  | |||  CCG AACAAGCCAA   G  GUUAGGUAUACCUAAC  CCCCUAACU           CCCC AAA  U GGG U U   G          GAU GG                UC         -----------    C   GU A   A
Stem-loop sequence	GGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACUAGGGAUUGAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ061352.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:106   AGGGCUUGUUCGGUUCUACCCCAA   129 Target Full Sequence	0.0	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:692   AGGGCUUGUUCGGUUCUACCCCAA   715 Target Full Sequence	0.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:834   AGGGCUUGUUCGGUUCUACCCCAA   857 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:780   AGGGCUUGUUCGGUUCUACCCCAA   803 Target Full Sequence	0.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:780   AGGGCUUGUUCGGUUCUACCCCAA   803 Target Full Sequence	0.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:781   AGGGCUUGUUCGGUUCUACCCCAA   804 Target Full Sequence	0.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:917   AGGGCUUGUUCGGUUCUACCCCAA   940 Target Full Sequence	0.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:853   AGGGCUUGUUCGGUUCUACCCCAA   876 Target Full Sequence	0.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:1898   AGGGCUUGUUCGGUUCUACCCCAA   1921 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||| targets:1898   AGGGCUUGUUCGGUUCUACCCCAA   1921 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   =||*|||||||||||||||||||| targets:353   GGGGCUUGUUCGGUUCUACCCCAA   376 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||=|||| targets:746   AGGGCUUGUUCGGUUCUACUCCAA   769 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||*|||||||| targets:782   AGGGCUUGUUCGGUUYUACCCCAA   805 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   ||||-||||||||||||||||||| targets:1038   AGGC-UUGUUCGGUUCUACCCCAA   1060 Target Full Sequence	0.0	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||= targets:797   AGGGCUUGUUCGGUUCUACCCCAG   820 Target Full Sequence	1.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||||||||||= targets:797   AGGGCUUGUUCGGUUCUACCCCAG   820 Target Full Sequence	1.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*||||||||||||||||=||| targets:1538   AGGGCUUGUUCGGUUCUACCUCAA   1561 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   *||*|||||||||||||||||||| targets:879   CGGGCUUGUUCGGUUCUACCCCAA   902 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   *||*|||||||||||||||||||| targets:1671   CGGGCUUGUUCGGUUCUACCCCAA   1694 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||=|*||||||||||||||=||| targets:209   AGGUCAUGUUCGGUUCUACCUCAA   232 Target Full Sequence	2.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   *|||-||||||||||||||||||| targets:886   UGGC-UUGUUCGGUUCUACCCCAA   908 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*||||||||*||||||||||| targets:847   AGGGCUUGUUCGAUUCUACCCCAA   870 Target Full Sequence	1.5	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||*|||||||| targets:1339   AGGGCUUGUUCGGUUAUACCCCAA   1362 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||*|||||||| targets:1383   AGGGCUUGUUCGGUUAUACCCCAA   1406 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||*|||||||| targets:1401   AGGGCUUGUUCGGUUAUACCCCAA   1424 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||*|||||||| targets:1415   AGGGCUUGUUCGGUUAUACCCCAA   1438 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*|||||||||||*|||||||| targets:1415   AGGGCUUGUUCGGUUAUACCCCAA   1438 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||*||||||||*||||||||||| targets:3028   AGGGCUUGUUCGUUUCUACCCCAA   3051 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
EZ081763.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   |||=|*||||||||||||||*||| targets:43   AGGUCAUGUUCGGUUCUACCACAA   66 Target Full Sequence	2.5	TSA: Zea mays contig17404, mRNA sequence	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   =||*|||||||||||*|||||||| targets:1606   GGGGCUUGUUCGGUUAUACCCCAA   1629 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   ||--||||||||*||||||||||| targets:8   AG--CUUGUUCGUUUCUACCCCAA   29 Target Full Sequence	1.5	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
HI406643.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   ||--||||||||*||||||||||| targets:8   AG--CUUGUUCGUUUCUACCCCAA   29 Target Full Sequence	1.5	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   UCCGGAACAAGCCAAGAUGGGGUU   1   ||--||||||||*||||||||||| targets:8   AG--CUUGUUCGUUUCUACCCCAA   29 Target Full Sequence	1.5	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548481.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1273   AAGCGUUUGUUCGGUUCUUCCCCAA   1297 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020548480.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1303   AAGCGUUUGUUCGGUUCUUCCCCAA   1327 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020548478.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1367   AAGCGUUUGUUCGGUUCUUCCCCAA   1391 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020548482.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1377   AAGCGUUUGUUCGGUUCUUCCCCAA   1401 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020548476.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1380   AAGCGUUUGUUCGGUUCUUCCCCAA   1404 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548479.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1387   AAGCGUUUGUUCGGUUCUUCCCCAA   1411 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020548475.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1397   AAGCGUUUGUUCGGUUCUUCCCCAA   1421 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548477.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1438   AAGCGUUUGUUCGGUUCUUCCCCAA   1462 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020548474.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1474   AAGCGUUUGUUCGGUUCUUCCCCAA   1498 Target Full Sequence	1.5	PREDICTED: Zea mays hsp70 nucleotide exchange factor FES1-like (LOC103647347), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956672.1	ncRNA:24   UCCG-GAACAAGCCAAGAUGGGGUU   1   |*||-=||||||||||||*|||||| targets:1681   AAGCGUUUGUUCGGUUCUUCCCCAA   1705 Target Full Sequence	1.5	Zea mays clone 1570344 mRNA sequence	NA	coding protein	psRNATarget