Search result

BaseInfo

ncRNA ID novel_zma_miR5591
Species Zea mays
Class miRNA
Genome position Chr1:34617610-34617704 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647389;SRR2647467
Length 24
Mature sequence(if miRNA) 72 - CAAGAUCUAUGGCGCCGACACCCU - 95
Stem-loop(if miRNA) -   -          -      A              C  ACAC   UA
 GGG GUCGGCGCCA AGAUCU UGGCGUCGACCCUC UG    GUG  C
 ||| |||||||||| |||||| |||||||||||||| ||    |||
 CCC CAGCCGCGGU UCUAGA ACCGCGGCUGGGGG AC    CGC  C
U   A          A      -              C  -AGC   CG
Stem-loop sequence GGGGUCGGCGCCAAGAUCUAUGGCGUCGACCCUCCUGACACGUGUACCGCCGCCGACACGGGGGUCGGCGCCAAGAUCUAUGGCGCCGACACCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544775.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ||||*|||||||||||||||||||
targets:62   AGGGGGUCGGCGCCAUAGAUCUUG   85

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA NA coding protein psRNATarget
XM_020545863.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  =|||*|||||||||||||||||||
targets:128   GGGGGGUCGGCGCCAUAGAUCUUG   151

0.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA NA coding protein psRNATarget
XM_020547098.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  =|||*|||||||||||||||||||
targets:128   GGGGGGUCGGCGCCAUAGAUCUUG   151

0.0 PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|||*|||||||||||||||||||
targets:182   CGGGGGUCGGCGCCAUAGAUCUUG   205

0.0 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_008668233.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  =|||*||||||||||*||||||||
targets:242   GGGGGGUCGGCGCCACAGAUCUUG   265

1.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC103645112), mRNA NA coding protein psRNATarget
XM_020538176.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|||-|||||||||||||||||||
targets:291   CGGG-GUCGGCGCCAUAGAUCUUG   313

0.0 PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA NA coding protein psRNATarget
XM_020543535.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ****|*||||||||||||||||||
targets:281   CACAUCUCGGCGCCAUAGAUCUUG   304

1.0 PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA NA coding protein psRNATarget
NM_001146799.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ****|*||||||||||||||||||
targets:1673   CACAUCUCGGCGCCAUAGAUCUUG   1696

1.0 Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA NA coding protein psRNATarget
BT038470.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ****|*||||||||||||||||||
targets:1673   CACAUCUCGGCGCCAUAGAUCUUG   1696

1.0 Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds NA coding protein psRNATarget
LQ238112.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:63   CCGAACUCGGCGCCAUAGAUCUUG   86

1.0 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
HI405982.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:63   CCGAACUCGGCGCCAUAGAUCUUG   86

1.0 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
JB166443.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:63   CCGAACUCGGCGCCAUAGAUCUUG   86

1.0 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ****|*||||||||||||||||||
targets:1755   CACAUCUCGGCGCCAUAGAUCUUG   1778

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ****|*||||||||||||||||||
targets:1780   CACAUCUCGGCGCCAUAGAUCUUG   1803

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ****|*||||||||||||||||||
targets:1787   CACAUCUCGGCGCCAUAGAUCUUG   1810

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:2   UGUACCUCGGCGCCAUAGAUCUUG   25

1.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:3   CGUACCUCGGCGCCAUAGAUCUUG   26

1.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:160   CGUACCUCGGCGCCAUAGAUCUUG   183

1.0 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:160   CGUACCUCGGCGCCAUAGAUCUUG   183

1.0 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:160   CGUACCUCGGCGCCAUAGAUCUUG   183

1.0 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:164   CGUACCUCGGCGCCAUAGAUCUUG   187

1.0 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:164   CGUACCUCGGCGCCAUAGAUCUUG   187

1.0 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:229   CGUACCUCGGCGCCAUAGAUCUUG   252

1.0 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  *|****||||||||||||||||||
targets:936   CGUACCUCGGCGCCAUAGAUCUUG   959

1.0 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_008666663.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:781   CCGAGCUCGGCGCCAUAGAUCUUG   804

1.0 PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:129   CCGAGCUCGGCGCCAUAGAUCUUG   152

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:1221   CCGAGCUCGGCGCCAUAGAUCUUG   1244

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:127   CCGAGCUCGGCGCCAUAGAUCUUG   150

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:1219   CCGAGCUCGGCGCCAUAGAUCUUG   1242

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:187   CCGAGCUCGGCGCCAUAGAUCUUG   210

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:1278   CCGAGCUCGGCGCCAUAGAUCUUG   1301

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:187   CCGAGCUCGGCGCCAUAGAUCUUG   210

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  **|***||||||||||||||||||
targets:1278   CCGAGCUCGGCGCCAUAGAUCUUG   1301

1.0 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
BT068330.1
ncRNA:24   UCCCACAGCCGCGGUAUCUAGAAC   1
  ******||||||||||||||=|||
targets:722   CCUAGCUCGGCGCCAUAGAUUUUG   745

2.5 Zea mays full-length cDNA clone ZM_BFb0107A05 mRNA, complete cds NA coding protein psRNATarget
XM_008650464.2
ncRNA:24   UCC-CACAGCCGCGGUAUCUAGAAC   1
  *||-|*|||||=||||*||||||||
targets:111   UGGCGGGUCGGUGCCAGAGAUCUUG   135

2.5 PREDICTED: Zea mays uncharacterized LOC103629300 (LOC103629300), mRNA NA coding protein psRNATarget