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BaseInfo

ncRNA ID novel_zma_miR5590
Species Zea mays
Class miRNA
Genome position Chr1:33756657-33756758 [+]
Reference genome RefGen_v4
Source SRR2638137;SRR2647388;SRR2647391
Length 24
Mature sequence(if miRNA) 79 - GAUCUAUCCUCCUUUUUGUGAGGG - 102
Stem-loop(if miRNA) -                     C           GUC   -CAG     GU
 CCUCACAAAAAGGAGGAUAGA CCCACCUGCAG   CAG    AUAAU  U
 ||||||||||||||||||||| |||||||||||   |||    |||||
 GGAGUGUUUUUCCUCCUAUCU GGGUGGGCGUC   GUU    UGUUG  U
G                     A           AUU   AUUA     AU
Stem-loop sequence CCUCACAAAAAGGAGGAUAGACCCCACCUGCAGGUCCAGCAGAUAAUGUUUUAGUUGUAUUAUUGUUACUGCGGGUGGGAUCUAUCCUCCUUUUUGUGAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
X55314.1
ncRNA:24   GGGAGUGUUUUUCCUCCUAUCUAG   1
  ||||||||||||||||||||||*|
targets:924   CCCUCACAAAAAGGAGGAUAGACC   947

1.5 Zea mays A2 gene NA coding protein psRNATarget
JB166522.1
ncRNA:20   GUGUUUUUCCUCCUAUCUAG   1
  ||||||||||||||||||*|
targets:1   CACAAAAAGGAGGAUAGACC   20

1.5 Sequence 4186 from Patent EP2559767 NA coding protein psRNATarget
LQ238191.1
ncRNA:20   GUGUUUUUCCUCCUAUCUAG   1
  ||||||||||||||||||*|
targets:1   CACAAAAAGGAGGAUAGACC   20

1.5 Sequence 4186 from Patent EP2985353 NA coding protein psRNATarget
HI406061.1
ncRNA:20   GUGUUUUUCCUCCUAUCUAG   1
  ||||||||||||||||||*|
targets:1   CACAAAAAGGAGGAUAGACC   20

1.5 Sequence 4186 from Patent EP2074227 NA coding protein psRNATarget