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BaseInfo

ncRNA ID novel_zma_miR5588
Species Zea mays
Class miRNA
Genome position Chr1:262733004-262733059 [-]
Reference genome RefGen_v4
Source SRR2638137
Length 24
Mature sequence(if miRNA) 33 - GCACUCGGCAAAGAACCUAUACCG - 56
Stem-loop(if miRNA) --       G         UAU   GGU
  GCACUCG CAAAGAACC   ACC   G
  ||||||| |||||||||   |||
  CGUGAGC GUUUCUUGG   UGG   C
AU       A         UUC   ACC
Stem-loop sequence GCACUCGGCAAAGAACCUAUACCGGUGCCCAGGUCUUGGUUCUUUGACGAGUGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238815.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  |||||||||||||||||||||||=
targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60

1.0 Sequence 4810 from Patent EP2985353 NA coding protein psRNATarget
HI406685.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  |||||||||||||||||||||||=
targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60

1.0 Sequence 4810 from Patent EP2074227 NA coding protein psRNATarget
JB167146.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  |||||||||||||||||||||||=
targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60

1.0 Sequence 4810 from Patent EP2559767 NA coding protein psRNATarget
HI406962.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  |||||||||||||||||||||||=
targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197

1.0 Sequence 5087 from Patent EP2074227 NA coding protein psRNATarget
LQ239092.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  |||||||||||||||||||||||=
targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197

1.0 Sequence 5087 from Patent EP2985353 NA coding protein psRNATarget
JB167423.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  |||||||||||||||||||||||=
targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197

1.0 Sequence 5087 from Patent EP2559767 NA coding protein psRNATarget
JB166605.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  ||||||||**||||||||||||||
targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71

2.0 Sequence 4269 from Patent EP2559767 NA coding protein psRNATarget
HI406144.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  ||||||||**||||||||||||||
targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71

2.0 Sequence 4269 from Patent EP2074227 NA coding protein psRNATarget
LQ238274.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  ||||||||**||||||||||||||
targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71

2.0 Sequence 4269 from Patent EP2985353 NA coding protein psRNATarget
LQ239157.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  *|||*|*|||||||||||||||||
targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69

1.0 Sequence 5152 from Patent EP2985353 NA coding protein psRNATarget
JB167488.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  *|||*|*|||||||||||||||||
targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69

1.0 Sequence 5152 from Patent EP2559767 NA coding protein psRNATarget
HI407027.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  *|||*|*|||||||||||||||||
targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69

1.0 Sequence 5152 from Patent EP2074227 NA coding protein psRNATarget
JB170246.1
ncRNA:24   GCCA----UA---UCCAAGAAACGGCUCACG   1
  *|||----||---||||||||||||||||||
targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96

3.0 Sequence 7910 from Patent EP2559767 NA coding protein psRNATarget
LQ241915.1
ncRNA:24   GCCA----UA---UCCAAGAAACGGCUCACG   1
  *|||----||---||||||||||||||||||
targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96

3.0 Sequence 7910 from Patent EP2985353 NA coding protein psRNATarget
HI409785.1
ncRNA:24   GCCA----UA---UCCAAGAAACGGCUCACG   1
  *|||----||---||||||||||||||||||
targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96

3.0 Sequence 7910 from Patent EP2074227 NA coding protein psRNATarget
EZ087925.1
ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1
  ||-||=|*||-|||||||||||||||
targets:43   CGAGUGUUGGCUUCUUUGCCGAGUGC   68

3.0 TSA: Zea mays contig23571, mRNA sequence NA coding protein psRNATarget
BT067215.1
ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1
  ||-||=|*||-|||||||||||||||
targets:1142   CGAGUGUUGGCUUCUUUGCCGAGUGC   1167

3.0 Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds NA coding protein psRNATarget
NM_001175109.1
ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1
  ||-||=|*||-|||||||||||||||
targets:1279   CGAGUGUUGGCUUCUUUGCCGAGUGC   1304

3.0 Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA NA coding protein psRNATarget
BT064046.1
ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1
  ||-||=|*||-|||||||||||||||
targets:1279   CGAGUGUUGGCUUCUUUGCCGAGUGC   1304

3.0 Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds NA coding protein psRNATarget
LQ240695.1
ncRNA:21   AUAUCCAAGAAACGGCUCACG   1
  **||||||||||||||||||=
targets:1   CUUAGGUUCUUUGCCGAGUGU   21

1.0 Sequence 6690 from Patent EP2985353 NA coding protein psRNATarget
JB169026.1
ncRNA:21   AUAUCCAAGAAACGGCUCACG   1
  **||||||||||||||||||=
targets:1   CUUAGGUUCUUUGCCGAGUGU   21

1.0 Sequence 6690 from Patent EP2559767 NA coding protein psRNATarget
HI408565.1
ncRNA:21   AUAUCCAAGAAACGGCUCACG   1
  **||||||||||||||||||=
targets:1   CUUAGGUUCUUUGCCGAGUGU   21

1.0 Sequence 6690 from Patent EP2074227 NA coding protein psRNATarget
LQ238223.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95

2.0 Sequence 4218 from Patent EP2985353 NA coding protein psRNATarget
HI406093.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95

2.0 Sequence 4218 from Patent EP2074227 NA coding protein psRNATarget
JB166554.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95

2.0 Sequence 4218 from Patent EP2559767 NA coding protein psRNATarget
NM_001175465.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:894   AAGUAAAUGUUCUUUGCCGAGUGC   917

2.0 Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA NA coding protein psRNATarget
BT065228.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:894   AAGUAAAUGUUCUUUGCCGAGUGC   917

2.0 Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds NA coding protein psRNATarget
EU942429.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:905   AAGUAAAUGUUCUUUGCCGAGUGC   928

2.0 Zea mays clone 1497931 mRNA sequence NA coding protein psRNATarget
XM_008673932.2
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1313   AAGUAAAUGUUCUUUGCCGAGUGC   1336

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008673931.2
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1317   AAGUAAAUGUUCUUUGCCGAGUGC   1340

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020549486.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1392   AAGUAAAUGUUCUUUGCCGAGUGC   1415

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020549484.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1397   AAGUAAAUGUUCUUUGCCGAGUGC   1420

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549487.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1397   AAGUAAAUGUUCUUUGCCGAGUGC   1420

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008673929.2
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1402   AAGUAAAUGUUCUUUGCCGAGUGC   1425

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020549485.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1443   AAGUAAAUGUUCUUUGCCGAGUGC   1466

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008673925.2
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1526   AAGUAAAUGUUCUUUGCCGAGUGC   1549

2.0 PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA NA coding protein psRNATarget
EU943138.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1788   AAGUAAAUGUUCUUUGCCGAGUGC   1811

2.0 Zea mays clone 1567640 mRNA sequence NA coding protein psRNATarget
NM_001138773.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1777   AAGUAAAUGUUCUUUGCCGAGUGC   1800

2.0 Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA NA coding protein psRNATarget
BT036012.1
ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1
  **|||*|*||||||||||||||||
targets:1777   AAGUAAAUGUUCUUUGCCGAGUGC   1800

2.0 Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds NA coding protein psRNATarget