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BaseInfo

ncRNA ID	novel_zma_miR5588
Species	Zea mays
Class	miRNA
Genome position	Chr1:262733004-262733059 [-]
Reference genome	RefGen_v4
Source	SRR2638137
Length	24
Mature sequence(if miRNA)	33 - GCACUCGGCAAAGAACCUAUACCG - 56
Stem-loop(if miRNA)	--       G         UAU   GGU   GCACUCG CAAAGAACC   ACC   G   ||||||| |||||||||   |||   CGUGAGC GUUUCUUGG   UGG   C AU       A         UUC   ACC
Stem-loop sequence	GCACUCGGCAAAGAACCUAUACCGGUGCCCAGGUCUUGGUUCUUUGACGAGUGCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238815.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   |||||||||||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	1.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   |||||||||||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	1.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   |||||||||||||||||||||||= targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	1.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   |||||||||||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	1.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   |||||||||||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	1.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   |||||||||||||||||||||||= targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	1.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   ||||||||**|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	2.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   ||||||||**|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	2.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   ||||||||**|||||||||||||| targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	2.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   *|||*|*||||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	1.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   *|||*|*||||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	1.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   *|||*|*||||||||||||||||| targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	1.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   GCCA----UA---UCCAAGAAACGGCUCACG   1   *|||----||---|||||||||||||||||| targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	3.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   GCCA----UA---UCCAAGAAACGGCUCACG   1   *|||----||---|||||||||||||||||| targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	3.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   GCCA----UA---UCCAAGAAACGGCUCACG   1   *|||----||---|||||||||||||||||| targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	3.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1   ||-||=|*||-||||||||||||||| targets:43   CGAGUGUUGGCUUCUUUGCCGAGUGC   68 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1   ||-||=|*||-||||||||||||||| targets:1142   CGAGUGUUGGCUUCUUUGCCGAGUGC   1167 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1   ||-||=|*||-||||||||||||||| targets:1279   CGAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   GC-CAUAUCC-AAGAAACGGCUCACG   1   ||-||=|*||-||||||||||||||| targets:1279   CGAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:21   AUAUCCAAGAAACGGCUCACG   1   **||||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	1.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:21   AUAUCCAAGAAACGGCUCACG   1   **||||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	1.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:21   AUAUCCAAGAAACGGCUCACG   1   **||||||||||||||||||= targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	1.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95 Target Full Sequence	2.0	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
HI406093.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95 Target Full Sequence	2.0	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
JB166554.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:72   AAGUAAAUGUUCUUUGCCGAGUGC   95 Target Full Sequence	2.0	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:894   AAGUAAAUGUUCUUUGCCGAGUGC   917 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
BT065228.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:894   AAGUAAAUGUUCUUUGCCGAGUGC   917 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU942429.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:905   AAGUAAAUGUUCUUUGCCGAGUGC   928 Target Full Sequence	2.0	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1313   AAGUAAAUGUUCUUUGCCGAGUGC   1336 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1317   AAGUAAAUGUUCUUUGCCGAGUGC   1340 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1392   AAGUAAAUGUUCUUUGCCGAGUGC   1415 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1397   AAGUAAAUGUUCUUUGCCGAGUGC   1420 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1397   AAGUAAAUGUUCUUUGCCGAGUGC   1420 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1402   AAGUAAAUGUUCUUUGCCGAGUGC   1425 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1443   AAGUAAAUGUUCUUUGCCGAGUGC   1466 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1526   AAGUAAAUGUUCUUUGCCGAGUGC   1549 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1788   AAGUAAAUGUUCUUUGCCGAGUGC   1811 Target Full Sequence	2.0	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1777   AAGUAAAUGUUCUUUGCCGAGUGC   1800 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget
BT036012.1	ncRNA:24   GCCAUAUCCAAGAAACGGCUCACG   1   **|||*|*|||||||||||||||| targets:1777   AAGUAAAUGUUCUUUGCCGAGUGC   1800 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget